Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC21.14■□□□□ 0.98
COL3A1P02461 TMEM218-210ENST00000529609 734 ntTSL 3 BASIC21.14■□□□□ 0.98
COL3A1P02461 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC21.14■□□□□ 0.98
COL3A1P02461 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC21.14■□□□□ 0.98
COL3A1P02461 CMC2-214ENST00000565925 640 ntTSL 5 BASIC21.14■□□□□ 0.98
COL3A1P02461 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC21.14■□□□□ 0.98
COL3A1P02461 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL3A1P02461 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC21.14■□□□□ 0.98
COL3A1P02461 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.98
COL3A1P02461 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC21.14■□□□□ 0.98
COL3A1P02461 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC21.14■□□□□ 0.97
COL3A1P02461 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC21.14■□□□□ 0.97
COL3A1P02461 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
COL3A1P02461 SEPT5-204ENST00000406395 1974 ntTSL 5 BASIC21.14■□□□□ 0.97
COL3A1P02461 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC21.14■□□□□ 0.97
COL3A1P02461 MAP7-203ENST00000438100 2633 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
COL3A1P02461 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC21.14■□□□□ 0.97
COL3A1P02461 TRIM46-209ENST00000543729 1703 ntTSL 5 BASIC21.14■□□□□ 0.97
COL3A1P02461 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC21.14■□□□□ 0.97
COL3A1P02461 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC21.13■□□□□ 0.97
COL3A1P02461 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC21.13■□□□□ 0.97
COL3A1P02461 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 LACTB2-203ENST00000522447 1034 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 AP002008.1-201ENST00000530283 1155 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC21.13■□□□□ 0.97
COL3A1P02461 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC21.13■□□□□ 0.97
COL3A1P02461 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL3A1P02461 AC007541.1-201ENST00000570282 1469 ntBASIC21.13■□□□□ 0.97
COL3A1P02461 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC21.13■□□□□ 0.97
COL3A1P02461 DEK-201ENST00000244776 1441 ntTSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC21.13■□□□□ 0.97
COL3A1P02461 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC21.13■□□□□ 0.97
COL3A1P02461 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC21.13■□□□□ 0.97
COL3A1P02461 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC21.13■□□□□ 0.97
COL3A1P02461 COQ6-210ENST00000554920 649 ntTSL 3 BASIC21.13■□□□□ 0.97
COL3A1P02461 AL390726.5-201ENST00000562942 871 ntTSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 RARRES2P5-201ENST00000564013 466 ntBASIC21.13■□□□□ 0.97
COL3A1P02461 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC21.13■□□□□ 0.97
COL3A1P02461 AC000095.1-201ENST00000603208 874 ntBASIC21.13■□□□□ 0.97
COL3A1P02461 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 VCX-203ENST00000620630 812 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
COL3A1P02461 IGHV3-72-202ENST00000621503 303 ntBASIC21.13■□□□□ 0.97
COL3A1P02461 C1orf43-202ENST00000362076 1551 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
COL3A1P02461 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
COL3A1P02461 NAT8L-202ENST00000423729 5870 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
COL3A1P02461 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL3A1P02461 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL3A1P02461 AL513523.2-202ENST00000427283 2040 ntBASIC21.12■□□□□ 0.97
COL3A1P02461 G6PD-203ENST00000393564 1661 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
COL3A1P02461 ADORA1-203ENST00000367235 2219 ntTSL 2 BASIC21.12■□□□□ 0.97
COL3A1P02461 C6orf106-202ENST00000374023 4418 ntAPPRIS P4 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL3A1P02461 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC21.12■□□□□ 0.97
COL3A1P02461 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC21.12■□□□□ 0.97
COL3A1P02461 ABHD3-201ENST00000289119 2064 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL3A1P02461 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL3A1P02461 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL3A1P02461 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC21.12■□□□□ 0.97
COL3A1P02461 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL3A1P02461 DGCR5-201ENST00000399539 862 ntBASIC21.12■□□□□ 0.97
COL3A1P02461 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC21.12■□□□□ 0.97
COL3A1P02461 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC21.12■□□□□ 0.97
COL3A1P02461 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
COL3A1P02461 RBM7-207ENST00000544582 692 ntTSL 3 BASIC21.12■□□□□ 0.97
COL3A1P02461 SLC8B1-206ENST00000549069 1058 ntTSL 2 BASIC21.12■□□□□ 0.97
COL3A1P02461 AL596325.1-201ENST00000563991 1082 ntBASIC21.12■□□□□ 0.97
COL3A1P02461 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC21.12■□□□□ 0.97
COL3A1P02461 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
COL3A1P02461 CECR7-204ENST00000609932 568 ntTSL 2 BASIC21.12■□□□□ 0.97
COL3A1P02461 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
COL3A1P02461 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
COL3A1P02461 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
COL3A1P02461 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
COL3A1P02461 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms