Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC16.24■□□□□ 0.19
VPS9D1Q9Y2B5 LOH12CR2-201ENST00000381800 1540 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS9D1Q9Y2B5 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VPS9D1Q9Y2B5 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC16.24■□□□□ 0.19
VPS9D1Q9Y2B5 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC16.24■□□□□ 0.19
VPS9D1Q9Y2B5 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS9D1Q9Y2B5 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 AC008894.3-201ENST00000624324 3103 ntBASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 C20orf85-201ENST00000371168 803 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 AL807752.7-201ENST00000471521 989 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 KRT18P58-201ENST00000527480 1120 ntBASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 AL603832.2-201ENST00000566195 2125 ntBASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 AC002347.1-201ENST00000569543 541 ntBASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 AL365203.3-201ENST00000609742 2057 ntBASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 MAGEF1-201ENST00000317897 1636 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
VPS9D1Q9Y2B5 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 AL136309.2-201ENST00000427049 2277 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 CCNI2-204ENST00000614847 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 RN7SL589P-201ENST00000481268 310 ntBASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 COX5A-206ENST00000568783 571 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 AC092865.6-201ENST00000642101 219 ntBASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 AL589702.1-201ENST00000641229 1509 ntBASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
VPS9D1Q9Y2B5 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 TOM1L1-204ENST00000570371 2442 ntTSL 5 BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 AC068587.6-202ENST00000641839 5619 ntBASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
VPS9D1Q9Y2B5 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms