Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 AL596257.1-201ENST00000641463 2694 ntBASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 SLC8A3-203ENST00000357887 5259 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 SLC8A3-204ENST00000381269 5268 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 MVB12A-211ENST00000529939 1091 ntTSL 3 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 SCART1-206ENST00000640237 4351 ntAPPRIS P1 TSL 5 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 AC022532.1-201ENST00000624563 1728 ntBASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 AP003680.1-201ENST00000598970 3660 ntBASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 WASH6P-202ENST00000359512 1437 ntBASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
LIMCH1Q9UPQ0 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 GHDC-207ENST00000587427 2396 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 AC005064.1-201ENST00000422488 2725 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 PBX1-219ENST00000560641 3225 ntTSL 5 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 NFATC4-211ENST00000554344 2955 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 CRAT-201ENST00000318080 2763 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC19.15■□□□□ 0.66
LIMCH1Q9UPQ0 AMT-233ENST00000636522 1620 ntTSL 2 BASIC19.14■□□□□ 0.66
LIMCH1Q9UPQ0 DBN1-202ENST00000309007 2995 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMCH1Q9UPQ0 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMCH1Q9UPQ0 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMCH1Q9UPQ0 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMCH1Q9UPQ0 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
LIMCH1Q9UPQ0 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC19.14■□□□□ 0.66
LIMCH1Q9UPQ0 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 MIR4321-201ENST00000592276 80 ntBASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 REM2-202ENST00000536884 1331 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 GPAT2-204ENST00000453542 2466 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 DMAP1-201ENST00000315913 1552 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC19.14■□□□□ 0.65
LIMCH1Q9UPQ0 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 DKFZP434H168-201ENST00000567381 1905 ntBASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 AC011477.6-201ENST00000604980 1927 ntBASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 EFCAB14-201ENST00000371933 5767 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 MON2-203ENST00000546600 6130 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
LIMCH1Q9UPQ0 SYDE1-204ENST00000600440 3058 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms