Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 AL022323.1-201ENST00000366110 957 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 ZNF564-202ENST00000416136 255 ntTSL 3 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 MTX1P1-201ENST00000440904 838 ntBASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 SELENOW-201ENST00000509570 881 ntTSL 5 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 AC139099.3-201ENST00000572850 472 ntTSL 5 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 AL021578.1-201ENST00000613646 709 ntBASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 AC008687.7-202ENST00000637404 953 ntBASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC20.6■□□□□ 0.89
SHANK3Q9BYB0 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 GPR17-202ENST00000393018 1177 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 AC078819.1-201ENST00000547454 765 ntBASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 AC012085.1-201ENST00000548270 765 ntBASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 THAP4-206ENST00000612200 969 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 TMEM14B-220ENST00000612333 888 ntTSL 3 BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 C7orf49-201ENST00000393114 1482 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 OSBP-201ENST00000263847 5083 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 PCTP-201ENST00000268896 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 ATP6V0E2-203ENST00000456496 2722 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 ATP6V0E2-213ENST00000615196 2727 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 HYAL3-201ENST00000336307 1942 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC20.59■□□□□ 0.89
SHANK3Q9BYB0 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 CNN2P10-201ENST00000443067 918 ntBASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 GPX4-206ENST00000588919 803 ntTSL 2 BASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 AL121944.1-201ENST00000605945 686 ntTSL 2 BASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 AL118558.3-201ENST00000607414 1079 ntBASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 CRCP-201ENST00000338592 1393 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC20.58■□□□□ 0.89
SHANK3Q9BYB0 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 NPPC-201ENST00000295440 500 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 ZG16B-201ENST00000382280 831 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 CALR4P-201ENST00000431943 946 ntBASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 ACTG1P17-201ENST00000558391 1119 ntBASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 LRRC25-201ENST00000339007 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 CDCA7L-203ENST00000406877 3066 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 ATG5-210ENST00000636437 2261 ntTSL 5 BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 LMNA-203ENST00000368297 1679 ntTSL 2 BASIC20.58■□□□□ 0.88
SHANK3Q9BYB0 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 CENPT-235ENST00000626059 1737 ntTSL 5 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 GABARAPL2-201ENST00000037243 1002 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 IGLV4-69-201ENST00000390282 419 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 ACTBP8-201ENST00000403258 1108 ntBASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 FOS-206ENST00000555347 1280 ntTSL 2 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 AC138951.2-201ENST00000623455 1161 ntBASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 AL138709.1-201ENST00000614840 1693 ntBASIC20.57■□□□□ 0.88
SHANK3Q9BYB0 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms