Protein–RNA interactions for Protein: O95025

SEMA3D, Semaphorin-3D, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SEMA3DO95025 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC15.65■□□□□ 0.1
SEMA3DO95025 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC15.65■□□□□ 0.1
SEMA3DO95025 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SEMA3DO95025 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
SEMA3DO95025 AC079328.2-201ENST00000561241 3354 ntBASIC15.65■□□□□ 0.1
SEMA3DO95025 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.65■□□□□ 0.1
SEMA3DO95025 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SEMA3DO95025 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 MIR648-201ENST00000385046 94 ntBASIC15.65■□□□□ 0.1
SEMA3DO95025 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC15.65■□□□□ 0.1
SEMA3DO95025 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.65■□□□□ 0.1
SEMA3DO95025 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC15.65■□□□□ 0.1
SEMA3DO95025 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 AC092865.6-201ENST00000642101 219 ntBASIC15.65■□□□□ 0.1
SEMA3DO95025 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC15.65■□□□□ 0.1
SEMA3DO95025 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC15.65■□□□□ 0.1
SEMA3DO95025 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SEMA3DO95025 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 MAGI1-202ENST00000402939 4389 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
SEMA3DO95025 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.65■□□□□ 0.1
SEMA3DO95025 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.64■□□□□ 0.1
SEMA3DO95025 CBWD1-201ENST00000314367 1771 ntTSL 1 (best) BASIC15.64■□□□□ 0.1
SEMA3DO95025 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC15.64■□□□□ 0.09
SEMA3DO95025 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 AC126755.1-201ENST00000525846 6405 ntBASIC15.64■□□□□ 0.09
SEMA3DO95025 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SEMA3DO95025 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC15.64■□□□□ 0.09
SEMA3DO95025 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.64■□□□□ 0.09
SEMA3DO95025 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
SEMA3DO95025 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SEMA3DO95025 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.64■□□□□ 0.09
SEMA3DO95025 KRT18P58-201ENST00000527480 1120 ntBASIC15.64■□□□□ 0.09
SEMA3DO95025 EEF1D-223ENST00000528610 923 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 AC040169.1-201ENST00000565382 521 ntBASIC15.64■□□□□ 0.09
SEMA3DO95025 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
SEMA3DO95025 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC15.64■□□□□ 0.09
SEMA3DO95025 AC099522.2-201ENST00000607001 744 ntBASIC15.64■□□□□ 0.09
SEMA3DO95025 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.64■□□□□ 0.09
SEMA3DO95025 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 AC068587.6-202ENST00000641839 5619 ntBASIC15.64■□□□□ 0.09
SEMA3DO95025 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SEMA3DO95025 KCTD11-201ENST00000333751 2783 ntAPPRIS P1 BASIC15.64■□□□□ 0.09
SEMA3DO95025 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
SEMA3DO95025 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
SEMA3DO95025 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
SEMA3DO95025 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
SEMA3DO95025 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 SNED1-202ENST00000342631 1930 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
SEMA3DO95025 ANKFY1-202ENST00000570535 6458 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 AC073439.1-201ENST00000624121 1774 ntBASIC15.63■□□□□ 0.09
SEMA3DO95025 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 ACHE-202ENST00000302913 2956 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 CPEB2-203ENST00000382395 5524 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC15.63■□□□□ 0.09
SEMA3DO95025 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC15.63■□□□□ 0.09
SEMA3DO95025 AL133467.1-201ENST00000554161 993 ntTSL 2 BASIC15.63■□□□□ 0.09
SEMA3DO95025 RARRES2P8-201ENST00000566335 367 ntBASIC15.63■□□□□ 0.09
SEMA3DO95025 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.63■□□□□ 0.09
SEMA3DO95025 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC15.63■□□□□ 0.09
SEMA3DO95025 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC15.63■□□□□ 0.09
SEMA3DO95025 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.63■□□□□ 0.09
SEMA3DO95025 NBEAL2-205ENST00000450053 8827 ntAPPRIS P1 TSL 2 BASIC15.63■□□□□ 0.09
SEMA3DO95025 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
SEMA3DO95025 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 71.8 ms