Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AC135050.7-201ENST00000624508 2218 ntBASIC12.37□□□□□ -0.43
COL6A5A8TX70 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 KSR1-205ENST00000509603 2731 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 AC133548.2-201ENST00000568567 2605 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 DOK1-201ENST00000233668 2555 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 ZFAND2B-205ENST00000409319 771 ntTSL 2 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 LINC01433-201ENST00000419003 697 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 NAGK-204ENST00000443872 878 ntTSL 3 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 AC079112.1-201ENST00000454972 939 ntBASIC12.37□□□□□ -0.43
COL6A5A8TX70 AL157792.1-201ENST00000488281 530 ntBASIC12.37□□□□□ -0.43
COL6A5A8TX70 RPS25-202ENST00000527673 835 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 NDUFC2-KCTD14-202ENST00000530054 656 ntAPPRIS P3 TSL 2 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 TP53AIP1-204ENST00000530777 363 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 FAM227B-210ENST00000560246 911 ntAPPRIS ALT2 TSL 3 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 AL118516.1-201ENST00000564152 670 ntBASIC12.37□□□□□ -0.43
COL6A5A8TX70 FO393412.1-201ENST00000619841 382 ntBASIC12.37□□□□□ -0.43
COL6A5A8TX70 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 HLA-DQB1-205ENST00000434651 1642 ntAPPRIS P1 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 AES-201ENST00000221561 1884 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 IP6K2-205ENST00000413298 792 ntTSL 3 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 FAU-202ENST00000434372 533 ntTSL 2 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 AC013355.1-201ENST00000562625 723 ntBASIC12.37□□□□□ -0.43
COL6A5A8TX70 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 AC011498.6-201ENST00000592034 510 ntTSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
COL6A5A8TX70 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC12.37□□□□□ -0.43
COL6A5A8TX70 LHX8-201ENST00000294638 2373 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 AC061961.1-201ENST00000443901 432 ntTSL 3 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 AL160290.2-202ENST00000448671 574 ntTSL 3 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 VDAC3-211ENST00000522572 799 ntTSL 5 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 AL136309.4-201ENST00000527831 640 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 LINC01584-201ENST00000562495 676 ntTSL 5 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 HIRIP3-204ENST00000564026 988 ntTSL 2 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 FAM192A-218ENST00000567439 1086 ntAPPRIS P1 TSL 2 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 AC022748.3-201ENST00000621828 275 ntBASIC12.36□□□□□ -0.43
COL6A5A8TX70 AC132938.4-201ENST00000623835 848 ntBASIC12.36□□□□□ -0.43
COL6A5A8TX70 LINC01669-205ENST00000624561 713 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 DMAC2-204ENST00000438807 1454 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 NME9-203ENST00000383180 2133 ntTSL 2 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 TH-205ENST00000381175 1898 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 BRMS1-202ENST00000425825 1363 ntTSL 5 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 CRYBA4-201ENST00000354760 811 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
COL6A5A8TX70 AGPAT5P1-201ENST00000455855 1019 ntBASIC12.36□□□□□ -0.43
COL6A5A8TX70 AL590640.2-201ENST00000457038 527 ntBASIC12.36□□□□□ -0.43
COL6A5A8TX70 RAMP3-202ENST00000481345 559 ntAPPRIS P2 TSL 4 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 CLDN11-207ENST00000486975 1139 ntTSL 2 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 AC078785.1-201ENST00000496389 734 ntTSL 3 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 AC133919.1-201ENST00000562203 416 ntTSL 3 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 NELFE-201ENST00000375425 1405 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
COL6A5A8TX70 AC006277.1-201ENST00000624348 1610 ntBASIC12.36□□□□□ -0.43
COL6A5A8TX70 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms