Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 NEK10-202ENST00000341435 2638 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMD1Q9UGP4 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.97■□□□□ 0.31
LIMD1Q9UGP4 GCDH-201ENST00000222214 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
LIMD1Q9UGP4 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC16.97■□□□□ 0.31
LIMD1Q9UGP4 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 PHF20L1-203ENST00000337920 2311 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 BLVRB-201ENST00000263368 873 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 SOD1-201ENST00000270142 966 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 UBE2G2-201ENST00000330942 721 ntTSL 3 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 RHOC-206ENST00000369637 888 ntAPPRIS P1 TSL 3 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 KRT223P-202ENST00000449164 1292 ntBASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 SDHAP3-202ENST00000515467 728 ntBASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 Z99916.3-201ENST00000623422 1080 ntBASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 AC011676.5-201ENST00000624864 2660 ntBASIC16.96■□□□□ 0.31
LIMD1Q9UGP4 SLCO5A1-206ENST00000530307 2630 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 TP73-208ENST00000378295 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.3
LIMD1Q9UGP4 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 CACNA1H-206ENST00000565831 7815 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 SPATC1L-202ENST00000330205 1182 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 MPV17-208ENST00000405076 603 ntTSL 5 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 FAM162A-202ENST00000469967 1015 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 AC009908.1-201ENST00000523030 412 ntTSL 3 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 CXXC1P1-201ENST00000483225 1897 ntTSL 2 BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
LIMD1Q9UGP4 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 RAB3IP-207ENST00000483530 1755 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 KCNMA1-261ENST00000639486 8850 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 SMAD3-201ENST00000327367 6247 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 KRT8P12-202ENST00000472924 1397 ntBASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 FAM120AOS-201ENST00000375412 2771 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 AC098850.1-201ENST00000419919 790 ntBASIC16.94■□□□□ 0.3
LIMD1Q9UGP4 AL589987.1-201ENST00000453380 819 ntBASIC16.94■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 89.4 ms