Protein–RNA interactions for Protein: Q9H4P4

RNF41, E3 ubiquitin-protein ligase NRDP1, humanhuman

Predicted RBP Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF41Q9H4P4 TLE4-206ENST00000376552 3695 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 TNNT3-204ENST00000381558 1258 ntAPPRIS ALT2 TSL 5 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 AC005306.1-201ENST00000587498 661 ntTSL 3 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 COQ4-205ENST00000609948 956 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 NNAT-201ENST00000062104 1297 ntAPPRIS P4 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 GRAMD4P3-201ENST00000621665 1669 ntBASIC19.16■□□□□ 0.66
RNF41Q9H4P4 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 YARS2-201ENST00000324868 2122 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC19.16■□□□□ 0.66
RNF41Q9H4P4 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 SLC1A6-208ENST00000598504 2987 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 GLDC-201ENST00000321612 3900 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 SLC6A9-204ENST00000372307 2162 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 MYO3A-206ENST00000543632 2203 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 BAD-202ENST00000394531 631 ntTSL 3 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 WRB-204ENST00000398753 699 ntTSL 3 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 HAUS4P1-201ENST00000406739 1145 ntBASIC19.15■□□□□ 0.66
RNF41Q9H4P4 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 AC107890.1-201ENST00000422478 521 ntBASIC19.15■□□□□ 0.66
RNF41Q9H4P4 PPP6R2P1-201ENST00000450880 1275 ntBASIC19.15■□□□□ 0.66
RNF41Q9H4P4 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 RFPL4AP1-201ENST00000530883 850 ntBASIC19.15■□□□□ 0.66
RNF41Q9H4P4 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 BAD-207ENST00000544785 525 ntTSL 3 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 BANF1P1-201ENST00000553684 263 ntBASIC19.15■□□□□ 0.66
RNF41Q9H4P4 AC090607.3-202ENST00000558971 383 ntTSL 3 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 AC140878.1-201ENST00000565277 250 ntBASIC19.15■□□□□ 0.66
RNF41Q9H4P4 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 PCDHB19P-201ENST00000570871 2371 ntBASIC19.15■□□□□ 0.66
RNF41Q9H4P4 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 TIMM50-220ENST00000607714 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 SLC8B1-210ENST00000550047 2493 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 GPR152-201ENST00000312457 1429 ntAPPRIS P1 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 AC099398.1-201ENST00000567919 2776 ntBASIC19.15■□□□□ 0.66
RNF41Q9H4P4 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC19.15■□□□□ 0.66
RNF41Q9H4P4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RNF41Q9H4P4 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RNF41Q9H4P4 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.14■□□□□ 0.66
RNF41Q9H4P4 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RNF41Q9H4P4 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RNF41Q9H4P4 CES3-203ENST00000543856 3178 ntTSL 2 BASIC19.14■□□□□ 0.66
RNF41Q9H4P4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.14■□□□□ 0.66
RNF41Q9H4P4 PLPPR4-202ENST00000370185 5369 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
RNF41Q9H4P4 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 SAP130-202ENST00000259235 4065 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 C10orf10-201ENST00000298295 2120 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
RNF41Q9H4P4 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms