Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 ANKRD26-201ENST00000376087 6591 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 BANP-204ENST00000393208 2283 ntTSL 2 BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 PABPC4-203ENST00000372858 2753 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
SYNE3Q6ZMZ3 AC008741.2-201ENST00000612792 3115 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 PCDHA6-203ENST00000529310 5374 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AC006449.6-201ENST00000612330 2296 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 KRT18P13-201ENST00000400056 1290 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AC079140.1-201ENST00000508039 487 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 YBX1P5-201ENST00000509441 847 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 KRT8P48-201ENST00000515599 1220 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AC105233.2-201ENST00000523697 349 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AF228730.5-201ENST00000530288 346 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AC243562.1-201ENST00000560672 389 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AL138918.1-201ENST00000568306 659 ntBASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 HNRNPH1-250ENST00000630639 123 ntTSL 5 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 TNXB-208ENST00000611016 6083 ntTSL 5 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 ZNF713-202ENST00000429591 4339 ntAPPRIS P2 TSL 5 BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
SYNE3Q6ZMZ3 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 TNR-201ENST00000263525 5190 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 ALG12-201ENST00000330817 5350 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 DHDH-204ENST00000523250 634 ntTSL 5 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 PUS1-205ENST00000535067 838 ntTSL 3 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 RAC2-201ENST00000249071 1482 ntAPPRIS P2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 AL592424.1-201ENST00000563624 1536 ntBASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
SYNE3Q6ZMZ3 PRLHR-201ENST00000239032 5446 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 MAGED4-211ENST00000599522 2669 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 LINC02199-201ENST00000506655 2702 ntBASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 SLC25A48-203ENST00000425402 2062 ntTSL 5 BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 ILVBL-201ENST00000263383 2304 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
SYNE3Q6ZMZ3 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.18■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 54.4 ms