Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 SLC43A1-204ENST00000528450 2358 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 RER1-209ENST00000605895 3044 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 B3GAT1-201ENST00000312527 3652 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 NIM1K-201ENST00000326035 2313 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.05■□□□□ 0.16
PKNOX1P55347 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PKNOX1P55347 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 RBM14-201ENST00000310137 2828 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 RPS23-201ENST00000296674 3437 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 HPCAL1-208ENST00000622018 1535 ntAPPRIS P1 TSL 5 BASIC16.04■□□□□ 0.16
PKNOX1P55347 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC16.04■□□□□ 0.16
PKNOX1P55347 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 BCL2L12-203ENST00000441864 1371 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 CADPS2-205ENST00000449022 4073 ntTSL 5 BASIC16.04■□□□□ 0.16
PKNOX1P55347 AC019205.2-202ENST00000441363 2403 ntTSL 5 BASIC16.04■□□□□ 0.16
PKNOX1P55347 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 SYT3-201ENST00000338916 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 HUS1B-201ENST00000380907 1025 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
PKNOX1P55347 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC16.04■□□□□ 0.16
PKNOX1P55347 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC16.04■□□□□ 0.16
PKNOX1P55347 ATP6V0CP3-201ENST00000417255 467 ntBASIC16.04■□□□□ 0.16
PKNOX1P55347 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC16.04■□□□□ 0.16
PKNOX1P55347 FAM185BP-201ENST00000443595 716 ntBASIC16.04■□□□□ 0.16
PKNOX1P55347 FAM197Y8-203ENST00000450145 560 ntBASIC16.04■□□□□ 0.16
PKNOX1P55347 AC108073.2-201ENST00000464002 357 ntBASIC16.04■□□□□ 0.16
PKNOX1P55347 AF186996.4-201ENST00000467186 377 ntBASIC16.04■□□□□ 0.16
PKNOX1P55347 NOP16-205ENST00000509257 1000 ntTSL 2 BASIC16.04■□□□□ 0.16
PKNOX1P55347 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC16.04■□□□□ 0.16
PKNOX1P55347 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.04■□□□□ 0.16
PKNOX1P55347 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.04■□□□□ 0.16
PKNOX1P55347 MIR4515-201ENST00000584082 81 ntBASIC16.04■□□□□ 0.16
PKNOX1P55347 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC16.04■□□□□ 0.16
PKNOX1P55347 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 TP73-AS1-207ENST00000624167 988 ntBASIC16.04■□□□□ 0.16
PKNOX1P55347 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.04■□□□□ 0.16
PKNOX1P55347 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC16.04■□□□□ 0.16
PKNOX1P55347 SURF6-201ENST00000372022 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
PKNOX1P55347 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.04■□□□□ 0.16
PKNOX1P55347 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 TNKS1BP1-207ENST00000532437 5952 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
PKNOX1P55347 SLC25A36-203ENST00000446041 4638 ntAPPRIS P3 TSL 2 BASIC16.04■□□□□ 0.16
PKNOX1P55347 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC16.04■□□□□ 0.16
PKNOX1P55347 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PKNOX1P55347 AP002414.3-201ENST00000589352 1468 ntBASIC16.03■□□□□ 0.16
PKNOX1P55347 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.03■□□□□ 0.16
PKNOX1P55347 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PKNOX1P55347 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.03■□□□□ 0.16
PKNOX1P55347 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 MAP1S-201ENST00000324096 3419 ntAPPRIS P3 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 TULP2-201ENST00000221399 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC16.03■□□□□ 0.16
PKNOX1P55347 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.03■□□□□ 0.16
PKNOX1P55347 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC16.03■□□□□ 0.16
PKNOX1P55347 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC16.03■□□□□ 0.16
PKNOX1P55347 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC16.03■□□□□ 0.16
PKNOX1P55347 KRT18P67-201ENST00000432816 1264 ntBASIC16.03■□□□□ 0.16
PKNOX1P55347 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC16.03■□□□□ 0.16
PKNOX1P55347 HNRNPDP1-201ENST00000439535 754 ntBASIC16.03■□□□□ 0.16
PKNOX1P55347 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.03■□□□□ 0.16
PKNOX1P55347 UNC93B7-201ENST00000509439 705 ntBASIC16.03■□□□□ 0.16
PKNOX1P55347 CCND3-213ENST00000510503 1257 ntTSL 3 BASIC16.03■□□□□ 0.16
PKNOX1P55347 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC16.03■□□□□ 0.16
PKNOX1P55347 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC16.03■□□□□ 0.16
PKNOX1P55347 OR7E47P-204ENST00000575924 449 ntBASIC16.03■□□□□ 0.16
PKNOX1P55347 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC16.03■□□□□ 0.16
PKNOX1P55347 AL121912.1-201ENST00000603683 238 ntBASIC16.03■□□□□ 0.16
PKNOX1P55347 AC021097.1-201ENST00000607902 574 ntBASIC16.03■□□□□ 0.16
PKNOX1P55347 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.03■□□□□ 0.16
PKNOX1P55347 PXN-207ENST00000536957 4112 ntAPPRIS ALT2 TSL 2 BASIC16.03■□□□□ 0.16
PKNOX1P55347 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.03■□□□□ 0.16
PKNOX1P55347 AP005117.1-202ENST00000581724 1908 ntBASIC16.03■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms