Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXA9P31269 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC16.84■□□□□ 0.29
HOXA9P31269 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
HOXA9P31269 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXA9P31269 ISLR2-203ENST00000435464 4259 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
HOXA9P31269 NOMO2-212ENST00000622306 4252 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
HOXA9P31269 EPN2-203ENST00000395618 2216 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXA9P31269 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXA9P31269 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.84■□□□□ 0.29
HOXA9P31269 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC16.84■□□□□ 0.29
HOXA9P31269 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
HOXA9P31269 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.29
HOXA9P31269 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HOXA9P31269 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HOXA9P31269 ISLR2-201ENST00000361742 4817 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HOXA9P31269 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.29
HOXA9P31269 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
HOXA9P31269 PPP2R5B-201ENST00000164133 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 ICA1-201ENST00000265577 2309 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
HOXA9P31269 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 NOL4L-205ENST00000375678 2042 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
HOXA9P31269 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC16.83■□□□□ 0.28
HOXA9P31269 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 ING4-202ENST00000396807 1393 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC16.83■□□□□ 0.28
HOXA9P31269 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 THPO-202ENST00000421442 1132 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 AC022210.1-201ENST00000449856 793 ntBASIC16.83■□□□□ 0.28
HOXA9P31269 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC16.83■□□□□ 0.28
HOXA9P31269 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC16.83■□□□□ 0.28
HOXA9P31269 AC021054.1-202ENST00000543884 599 ntTSL 3 BASIC16.83■□□□□ 0.28
HOXA9P31269 AC092552.1-201ENST00000547243 906 ntBASIC16.83■□□□□ 0.28
HOXA9P31269 AC243562.2-201ENST00000561247 970 ntBASIC16.83■□□□□ 0.28
HOXA9P31269 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC16.83■□□□□ 0.28
HOXA9P31269 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC16.83■□□□□ 0.28
HOXA9P31269 AL691432.1-201ENST00000596308 1422 ntBASIC16.83■□□□□ 0.28
HOXA9P31269 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.83■□□□□ 0.28
HOXA9P31269 MTHFD1L-211ENST00000611279 3475 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
HOXA9P31269 AL033527.5-201ENST00000641382 801 ntBASIC16.83■□□□□ 0.28
HOXA9P31269 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
HOXA9P31269 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.82■□□□□ 0.28
HOXA9P31269 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXA9P31269 TBXAS1-210ENST00000458722 2057 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXA9P31269 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 MIER1-206ENST00000371016 1802 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC16.82■□□□□ 0.28
HOXA9P31269 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXA9P31269 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
HOXA9P31269 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC16.82■□□□□ 0.28
HOXA9P31269 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 TNRC18P3-201ENST00000441896 2691 ntBASIC16.82■□□□□ 0.28
HOXA9P31269 CCDC154-202ENST00000409671 2561 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXA9P31269 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXA9P31269 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXA9P31269 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXA9P31269 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.82■□□□□ 0.28
HOXA9P31269 AL160035.1-201ENST00000637583 576 ntTSL 4 BASIC16.82■□□□□ 0.28
HOXA9P31269 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
HOXA9P31269 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXA9P31269 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC16.82■□□□□ 0.28
HOXA9P31269 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 C8orf33-201ENST00000331434 2677 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
HOXA9P31269 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HOXA9P31269 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC16.81■□□□□ 0.28
HOXA9P31269 AL592424.1-201ENST00000563624 1536 ntBASIC16.81■□□□□ 0.28
HOXA9P31269 AC105020.1-201ENST00000435356 2205 ntBASIC16.81■□□□□ 0.28
HOXA9P31269 CLK3P2-201ENST00000427566 1453 ntBASIC16.81■□□□□ 0.28
HOXA9P31269 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXA9P31269 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
HOXA9P31269 RNF144A-201ENST00000320892 5743 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXA9P31269 MIB2-219ENST00000505820 3305 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXA9P31269 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXA9P31269 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXA9P31269 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC16.81■□□□□ 0.28
HOXA9P31269 MIR658-201ENST00000385210 100 ntBASIC16.81■□□□□ 0.28
HOXA9P31269 BOLA2P3-201ENST00000404566 256 ntBASIC16.81■□□□□ 0.28
HOXA9P31269 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXA9P31269 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC16.81■□□□□ 0.28
HOXA9P31269 ATXN2-AS-201ENST00000547021 485 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXA9P31269 TMEM170A-203ENST00000566980 547 ntTSL 5 BASIC16.81■□□□□ 0.28
HOXA9P31269 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HOXA9P31269 GADD45B-204ENST00000587345 765 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXA9P31269 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
HOXA9P31269 AL512343.1-201ENST00000605837 169 ntBASIC16.81■□□□□ 0.28
HOXA9P31269 IL32-235ENST00000613483 1033 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
HOXA9P31269 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
HOXA9P31269 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC16.81■□□□□ 0.28
HOXA9P31269 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC16.81■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms