Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH5O43196 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH5O43196 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH5O43196 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH5O43196 ABHD14B-206ENST00000483233 2056 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH5O43196 NME9-203ENST00000383180 2133 ntTSL 2 BASIC22.72■■□□□ 1.23
MSH5O43196 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH5O43196 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC22.72■■□□□ 1.23
MSH5O43196 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 RAET1L-202ENST00000367341 1285 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 BX119904.4-201ENST00000424402 301 ntBASIC22.71■■□□□ 1.23
MSH5O43196 AC092634.2-201ENST00000428146 1010 ntBASIC22.71■■□□□ 1.23
MSH5O43196 DMD-AS3-201ENST00000439592 293 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH5O43196 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH5O43196 AC104781.1-201ENST00000449838 397 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH5O43196 AC138089.1-201ENST00000450847 967 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 NECTIN3-AS1-202ENST00000467426 664 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH5O43196 OR52A4P-203ENST00000498233 1014 ntBASIC22.71■■□□□ 1.23
MSH5O43196 AL589666.1-201ENST00000503906 835 ntAPPRIS P1 TSL 5 BASIC22.71■■□□□ 1.23
MSH5O43196 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 AP000851.1-202ENST00000542119 743 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH5O43196 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC22.71■■□□□ 1.23
MSH5O43196 ZFPM1-203ENST00000562437 502 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 AC008992.1-201ENST00000591132 446 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC22.71■■□□□ 1.23
MSH5O43196 TFG-209ENST00000615993 1244 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 AC109471.3-201ENST00000625219 233 ntTSL 5 BASIC22.71■■□□□ 1.23
MSH5O43196 AC245100.4-201ENST00000634549 1082 ntTSL 5 BASIC22.71■■□□□ 1.23
MSH5O43196 FASTK-202ENST00000353841 1402 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 TBC1D3P5-201ENST00000579401 1545 ntBASIC22.71■■□□□ 1.23
MSH5O43196 LINC00894-202ENST00000425602 1597 ntTSL 2 BASIC22.71■■□□□ 1.23
MSH5O43196 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
MSH5O43196 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC22.71■■□□□ 1.23
MSH5O43196 ZCCHC23-201ENST00000500526 1951 ntTSL 2 BASIC22.7■■□□□ 1.23
MSH5O43196 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC22.7■■□□□ 1.23
MSH5O43196 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC22.7■■□□□ 1.23
MSH5O43196 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC22.7■■□□□ 1.22
MSH5O43196 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
MSH5O43196 RN7SKP263-201ENST00000411194 309 ntBASIC22.7■■□□□ 1.22
MSH5O43196 PCNPP4-201ENST00000414817 517 ntBASIC22.7■■□□□ 1.22
MSH5O43196 TSEN15P1-201ENST00000423257 515 ntBASIC22.7■■□□□ 1.22
MSH5O43196 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC22.7■■□□□ 1.22
MSH5O43196 VN2R19P-201ENST00000442399 1052 ntBASIC22.7■■□□□ 1.22
MSH5O43196 BCRP1-201ENST00000444246 691 ntBASIC22.7■■□□□ 1.22
MSH5O43196 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC22.7■■□□□ 1.22
MSH5O43196 MTCO3P16-201ENST00000454456 754 ntBASIC22.7■■□□□ 1.22
MSH5O43196 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC22.7■■□□□ 1.22
MSH5O43196 LINC02039-201ENST00000507428 566 ntTSL 4 BASIC22.7■■□□□ 1.22
MSH5O43196 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC22.7■■□□□ 1.22
MSH5O43196 AC025419.1-207ENST00000546198 1072 ntTSL 3 BASIC22.7■■□□□ 1.22
MSH5O43196 BNIP3P38-201ENST00000601117 544 ntBASIC22.7■■□□□ 1.22
MSH5O43196 AC106052.1-201ENST00000608029 497 ntBASIC22.7■■□□□ 1.22
MSH5O43196 AC093512.1-201ENST00000617969 520 ntBASIC22.7■■□□□ 1.22
MSH5O43196 TM2D3-202ENST00000347970 1329 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 AC022486.1-201ENST00000510613 1483 ntTSL 5 BASIC22.7■■□□□ 1.22
MSH5O43196 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 MYLKP1-201ENST00000509077 1580 ntBASIC22.7■■□□□ 1.22
MSH5O43196 AL132656.3-201ENST00000606384 1595 ntBASIC22.7■■□□□ 1.22
MSH5O43196 HLA-DQB1-201ENST00000374943 1656 ntBASIC22.7■■□□□ 1.22
MSH5O43196 NDN-201ENST00000331837 1931 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
MSH5O43196 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 YARS-201ENST00000373477 3238 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
MSH5O43196 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC22.7■■□□□ 1.22
MSH5O43196 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC22.69■■□□□ 1.22
MSH5O43196 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH5O43196 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
MSH5O43196 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH5O43196 LINC01126-201ENST00000623515 1646 ntBASIC22.69■■□□□ 1.22
MSH5O43196 PMPCAP1-201ENST00000508114 1576 ntBASIC22.69■■□□□ 1.22
MSH5O43196 AC023050.4-201ENST00000538830 1380 ntBASIC22.69■■□□□ 1.22
MSH5O43196 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC22.69■■□□□ 1.22
MSH5O43196 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
MSH5O43196 SH3BGR-203ENST00000380634 816 ntTSL 5 BASIC22.69■■□□□ 1.22
MSH5O43196 AL138826.1-202ENST00000415106 692 ntAPPRIS P1 TSL 2 BASIC22.69■■□□□ 1.22
MSH5O43196 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC22.69■■□□□ 1.22
MSH5O43196 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC22.69■■□□□ 1.22
MSH5O43196 AGPAT5P1-201ENST00000455855 1019 ntBASIC22.69■■□□□ 1.22
MSH5O43196 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC22.69■■□□□ 1.22
MSH5O43196 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC22.69■■□□□ 1.22
MSH5O43196 NFRKB-205ENST00000526940 539 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH5O43196 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC22.69■■□□□ 1.22
MSH5O43196 RN7SL819P-201ENST00000581896 270 ntBASIC22.69■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 40.8 ms