Protein–RNA interactions for Protein: Q9UPQ4

TRIM35, Tripartite motif-containing protein 35, humanhuman

Predictions only

Length 493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM35Q9UPQ4 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 AL512361.1-201ENST00000554200 418 ntBASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 CDC14C-201ENST00000428251 1719 ntBASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 TACR2-203ENST00000619173 1713 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM35Q9UPQ4 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 POU4F2-201ENST00000281321 3144 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 RPS19-201ENST00000221975 500 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 KLK8-202ENST00000320838 456 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 ATP5L2-201ENST00000505920 799 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 LY6E-204ENST00000519546 971 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 TTC29-202ENST00000398886 1729 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 FNBP1-203ENST00000443566 5227 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 ULK3-201ENST00000440863 2623 ntAPPRIS P3 TSL 2 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 DIP2A-205ENST00000466639 2711 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM35Q9UPQ4 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 CELF4-202ENST00000361795 1853 ntAPPRIS ALT1 TSL 2 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 RUSC2-202ENST00000455600 5636 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 AC009477.1-201ENST00000452936 217 ntBASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 AC093214.1-201ENST00000511688 1107 ntBASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 SPCS2P1-201ENST00000561636 679 ntBASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 AC009407.1-201ENST00000568958 598 ntBASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 LINC00237-203ENST00000593272 630 ntTSL 4 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 AC112504.1-201ENST00000623415 1841 ntBASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 EFNB3-201ENST00000226091 3222 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 OCIAD1-202ENST00000381473 1594 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 DOC2GP-204ENST00000639052 2548 ntBASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 XRCC1-202ENST00000543982 1994 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 BRSK1-202ENST00000326848 2095 ntTSL 5 BASIC21.05■□□□□ 0.96
TRIM35Q9UPQ4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 ADGRB1-201ENST00000323289 5527 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 PARP9-204ENST00000471785 3040 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 VMA21-202ENST00000370361 693 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 AC241585.1-201ENST00000433527 519 ntBASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 BCRP1-201ENST00000444246 691 ntBASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM35Q9UPQ4 AC010336.2-201ENST00000564226 506 ntBASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 35 ms