Protein–RNA interactions for Protein: Q99758

ABCA3, ATP-binding cassette sub-family A member 3, humanhuman

Predictions only

Length 1,704 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA3Q99758 CYP2AB1P-202ENST00000454440 1456 ntBASIC21.21■□□□□ 0.99
ABCA3Q99758 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC21.2■□□□□ 0.99
ABCA3Q99758 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA3Q99758 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA3Q99758 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA3Q99758 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA3Q99758 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA3Q99758 IP6K2-202ENST00000340879 1185 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA3Q99758 PPP1R14B-202ENST00000392210 600 ntTSL 3 BASIC21.2■□□□□ 0.98
ABCA3Q99758 KRTAP10-13P-201ENST00000412914 571 ntBASIC21.2■□□□□ 0.98
ABCA3Q99758 PTPA-217ENST00000434095 870 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA3Q99758 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC21.2■□□□□ 0.98
ABCA3Q99758 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC21.2■□□□□ 0.98
ABCA3Q99758 EIF3M-203ENST00000524896 1207 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA3Q99758 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC21.2■□□□□ 0.98
ABCA3Q99758 IGHV3OR16-9-202ENST00000558425 288 ntAPPRIS ALT2 BASIC21.2■□□□□ 0.98
ABCA3Q99758 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC21.2■□□□□ 0.98
ABCA3Q99758 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC21.2■□□□□ 0.98
ABCA3Q99758 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA3Q99758 MIR4722-201ENST00000578292 60 ntBASIC21.2■□□□□ 0.98
ABCA3Q99758 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA3Q99758 SPCS2P2-201ENST00000603270 608 ntBASIC21.2■□□□□ 0.98
ABCA3Q99758 AL451050.2-201ENST00000606967 682 ntBASIC21.2■□□□□ 0.98
ABCA3Q99758 TRA2A-212ENST00000621813 1931 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
ABCA3Q99758 RGS3-211ENST00000462403 2155 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA3Q99758 LCMT2-202ENST00000567039 1545 ntTSL 2 BASIC21.2■□□□□ 0.98
ABCA3Q99758 RIC8B-203ENST00000392839 2440 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA3Q99758 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
ABCA3Q99758 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
ABCA3Q99758 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC21.19■□□□□ 0.98
ABCA3Q99758 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC21.19■□□□□ 0.98
ABCA3Q99758 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC21.19■□□□□ 0.98
ABCA3Q99758 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC21.19■□□□□ 0.98
ABCA3Q99758 TNNT1-203ENST00000536926 901 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
ABCA3Q99758 KSR1-207ENST00000578981 748 ntTSL 4 BASIC21.19■□□□□ 0.98
ABCA3Q99758 GPX4-206ENST00000588919 803 ntTSL 2 BASIC21.19■□□□□ 0.98
ABCA3Q99758 U62317.3-201ENST00000608319 855 ntBASIC21.19■□□□□ 0.98
ABCA3Q99758 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
ABCA3Q99758 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
ABCA3Q99758 SERPINF2-202ENST00000382061 2265 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 CNGA3-205ENST00000436404 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 SIX5-201ENST00000317578 3318 ntAPPRIS P2 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 ACSM2B-211ENST00000567001 1988 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
ABCA3Q99758 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 IFITM5-201ENST00000382614 736 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC21.18■□□□□ 0.98
ABCA3Q99758 AP003171.2-201ENST00000528208 925 ntBASIC21.18■□□□□ 0.98
ABCA3Q99758 AC007406.3-201ENST00000537295 1063 ntTSL 2 BASIC21.18■□□□□ 0.98
ABCA3Q99758 AC090825.1-203ENST00000558188 582 ntTSL 3 BASIC21.18■□□□□ 0.98
ABCA3Q99758 AC007861.2-201ENST00000573819 571 ntTSL 4 BASIC21.18■□□□□ 0.98
ABCA3Q99758 PRCD-204ENST00000586148 630 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
ABCA3Q99758 PRCD-210ENST00000592014 462 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 AL445288.1-201ENST00000610846 654 ntTSL 4 BASIC21.18■□□□□ 0.98
ABCA3Q99758 AP001505.2-201ENST00000616815 443 ntBASIC21.18■□□□□ 0.98
ABCA3Q99758 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
ABCA3Q99758 DDX28-201ENST00000332395 2169 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
ABCA3Q99758 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
ABCA3Q99758 U2AF2-201ENST00000308924 1698 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 NOS2P2-202ENST00000639528 1659 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 FAM222A-201ENST00000358906 2731 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
ABCA3Q99758 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC21.18■□□□□ 0.98
ABCA3Q99758 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC21.18■□□□□ 0.98
ABCA3Q99758 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
ABCA3Q99758 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC21.18■□□□□ 0.98
ABCA3Q99758 AANAT-201ENST00000250615 1913 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC21.18■□□□□ 0.98
ABCA3Q99758 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
ABCA3Q99758 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 KLK1-201ENST00000301420 866 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
ABCA3Q99758 CSAG1-202ENST00000370287 875 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 AL662890.1-201ENST00000396818 632 ntBASIC21.18■□□□□ 0.98
ABCA3Q99758 AL133267.1-201ENST00000398220 340 ntBASIC21.18■□□□□ 0.98
ABCA3Q99758 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC21.18■□□□□ 0.98
ABCA3Q99758 KCNQ1DN-201ENST00000441418 1093 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 LEF1-AS1-204ENST00000508266 559 ntTSL 4 BASIC21.18■□□□□ 0.98
ABCA3Q99758 AC012640.1-201ENST00000509915 688 ntTSL 3 BASIC21.18■□□□□ 0.98
ABCA3Q99758 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC21.18■□□□□ 0.98
ABCA3Q99758 CNIH3-201ENST00000272133 2558 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
ABCA3Q99758 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA3Q99758 KRT9-202ENST00000588431 1493 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA3Q99758 AC009053.2-201ENST00000563701 2365 ntBASIC21.17■□□□□ 0.98
ABCA3Q99758 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC21.17■□□□□ 0.98
ABCA3Q99758 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA3Q99758 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA3Q99758 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA3Q99758 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
ABCA3Q99758 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 28 ms