Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 FOXR1-201ENST00000317011 1159 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 MEP1AP4-201ENST00000423244 1087 ntBASIC16.3■□□□□ 0.2
HMGB4Q8WW32 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 AC005520.2-201ENST00000556194 573 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 AL603756.1-201ENST00000606511 2163 ntBASIC16.3■□□□□ 0.2
HMGB4Q8WW32 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
HMGB4Q8WW32 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 IL12RB2-202ENST00000371000 2454 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 ASNA1-204ENST00000591090 1368 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 RELA-227ENST00000615805 2236 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 TUBG2-201ENST00000251412 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 EIPR1-202ENST00000398659 1795 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 EIF1B-AS1-206ENST00000631175 1303 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 ACA64.2-201ENST00000459014 129 ntBASIC16.29■□□□□ 0.2
HMGB4Q8WW32 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 AC123567.1-201ENST00000548294 1261 ntBASIC16.29■□□□□ 0.2
HMGB4Q8WW32 AL162274.1-201ENST00000617191 1098 ntBASIC16.29■□□□□ 0.2
HMGB4Q8WW32 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 BANP-227ENST00000626016 2144 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 STK24-203ENST00000397517 4578 ntTSL 2 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 DOK5-201ENST00000262593 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
HMGB4Q8WW32 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 ZBTB7C-221ENST00000590800 4947 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 LZTS3-203ENST00000360342 4055 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 HMGXB3-201ENST00000502717 4974 ntAPPRIS P2 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 TTTY23B-201ENST00000442790 549 ntBASIC16.28■□□□□ 0.2
HMGB4Q8WW32 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 RN7SL837P-201ENST00000463010 287 ntBASIC16.28■□□□□ 0.2
HMGB4Q8WW32 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 KRT17P8-201ENST00000540749 863 ntBASIC16.28■□□□□ 0.2
HMGB4Q8WW32 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 RAB43P1-201ENST00000561790 589 ntBASIC16.28■□□□□ 0.2
HMGB4Q8WW32 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 FBXL5-202ENST00000412094 2837 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC16.28■□□□□ 0.2
HMGB4Q8WW32 PCGF3-213ENST00000620529 1899 ntBASIC16.28■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms