Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 ARHGAP22-205ENST00000417912 2352 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AL355987.1-201ENST00000435202 2420 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 KPNA2-202ENST00000537025 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 SZT2-AS1-201ENST00000396885 699 ntTSL 3 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AL512384.1-201ENST00000406683 331 ntBASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AC074338.1-201ENST00000416825 156 ntBASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 BMP7-AS1-201ENST00000445956 436 ntTSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 ZFPL1-207ENST00000526791 384 ntTSL 3 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AC123567.1-201ENST00000548294 1261 ntBASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AC010327.1-201ENST00000587871 975 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 DACH1-202ENST00000613252 5233 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AL391825.1-201ENST00000457671 1364 ntBASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 TLE3-226ENST00000627388 5742 ntAPPRIS ALT1 TSL 5 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AL592424.1-201ENST00000563624 1536 ntBASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 CAPZB-204ENST00000375144 1568 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 TLE2-219ENST00000591529 2483 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SHROOM1Q2M3G4 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 PLCH2-205ENST00000449969 5450 ntTSL 5 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 DHCR7-201ENST00000355527 2666 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 C1orf68-201ENST00000368775 949 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 TRABD-202ENST00000380909 2272 ntAPPRIS P3 TSL 5 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 AC087499.6-201ENST00000411576 835 ntBASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 AC020915.1-202ENST00000427361 922 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 AC092337.1-201ENST00000568699 1129 ntBASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 AL691432.1-201ENST00000596308 1422 ntBASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 AC244517.11-204ENST00000624424 760 ntTSL 5 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 USP25-204ENST00000400183 5341 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
SHROOM1Q2M3G4 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 ADAM8-205ENST00000485491 2441 ntTSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 TRAF3-204ENST00000539721 1786 ntTSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CDC14C-201ENST00000428251 1719 ntBASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 AC098614.1-201ENST00000368528 745 ntBASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 ATP5G2P4-201ENST00000442175 420 ntBASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 AC074044.1-201ENST00000609673 707 ntBASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 WFDC1-204ENST00000613603 549 ntBASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC18.86■□□□□ 0.61
SHROOM1Q2M3G4 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms