Protein–RNA interactions for Protein: O60840

CACNA1F, Voltage-dependent L-type calcium channel subunit alpha-1F, humanhuman

Predictions only

Length 1,977 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1FO60840 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CACNA1FO60840 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC20.25■□□□□ 0.83
CACNA1FO60840 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC20.25■□□□□ 0.83
CACNA1FO60840 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC20.25■□□□□ 0.83
CACNA1FO60840 NCAPH2-202ENST00000395698 1388 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CACNA1FO60840 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
CACNA1FO60840 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC20.25■□□□□ 0.83
CACNA1FO60840 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC20.25■□□□□ 0.83
CACNA1FO60840 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC20.25■□□□□ 0.83
CACNA1FO60840 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC20.25■□□□□ 0.83
CACNA1FO60840 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC20.25■□□□□ 0.83
CACNA1FO60840 FAM212B-207ENST00000534365 1217 ntTSL 5 BASIC20.25■□□□□ 0.83
CACNA1FO60840 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
CACNA1FO60840 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC20.25■□□□□ 0.83
CACNA1FO60840 COX11-202ENST00000571584 1108 ntTSL 2 BASIC20.25■□□□□ 0.83
CACNA1FO60840 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC20.25■□□□□ 0.83
CACNA1FO60840 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CACNA1FO60840 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
CACNA1FO60840 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC20.24■□□□□ 0.83
CACNA1FO60840 FOXK2-201ENST00000335255 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CACNA1FO60840 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CACNA1FO60840 CCT7-216ENST00000540468 1674 ntTSL 2 BASIC20.24■□□□□ 0.83
CACNA1FO60840 HOXD3-201ENST00000249440 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CACNA1FO60840 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CACNA1FO60840 SCAND1-201ENST00000305978 902 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CACNA1FO60840 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
CACNA1FO60840 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CACNA1FO60840 ELP6-209ENST00000446787 894 ntTSL 3 BASIC20.24■□□□□ 0.83
CACNA1FO60840 SLED1-202ENST00000512051 380 ntBASIC20.24■□□□□ 0.83
CACNA1FO60840 AC055876.2-201ENST00000531834 546 ntBASIC20.24■□□□□ 0.83
CACNA1FO60840 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CACNA1FO60840 AC015688.8-201ENST00000577746 656 ntTSL 4 BASIC20.24■□□□□ 0.83
CACNA1FO60840 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC20.24■□□□□ 0.83
CACNA1FO60840 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.24■□□□□ 0.83
CACNA1FO60840 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC20.24■□□□□ 0.83
CACNA1FO60840 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
CACNA1FO60840 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 ZNF418-208ENST00000599852 2501 ntTSL 2 BASIC20.23■□□□□ 0.83
CACNA1FO60840 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
CACNA1FO60840 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.23■□□□□ 0.83
CACNA1FO60840 RNASEH1-AS1-202ENST00000438436 1218 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 SPTLC1P1-201ENST00000447199 261 ntBASIC20.23■□□□□ 0.83
CACNA1FO60840 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 RAD51D-205ENST00000460118 1064 ntTSL 5 BASIC20.23■□□□□ 0.83
CACNA1FO60840 API5-211ENST00000534695 560 ntTSL 5 BASIC20.23■□□□□ 0.83
CACNA1FO60840 AL158212.4-201ENST00000624062 1286 ntBASIC20.23■□□□□ 0.83
CACNA1FO60840 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CACNA1FO60840 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
CACNA1FO60840 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC20.23■□□□□ 0.83
CACNA1FO60840 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 UBB-201ENST00000302182 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
CACNA1FO60840 ZDHHC20-IT1-201ENST00000417513 440 ntTSL 3 BASIC20.23■□□□□ 0.83
CACNA1FO60840 RHOA-206ENST00000454011 889 ntTSL 2 BASIC20.23■□□□□ 0.83
CACNA1FO60840 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC20.23■□□□□ 0.83
CACNA1FO60840 SDHAP3-202ENST00000515467 728 ntBASIC20.23■□□□□ 0.83
CACNA1FO60840 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC20.23■□□□□ 0.83
CACNA1FO60840 AC015910.1-201ENST00000579400 975 ntBASIC20.23■□□□□ 0.83
CACNA1FO60840 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC20.23■□□□□ 0.83
CACNA1FO60840 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 PGR-209ENST00000617858 2816 ntTSL 5 BASIC20.22■□□□□ 0.83
CACNA1FO60840 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 ACE-203ENST00000413513 2237 ntTSL 2 BASIC20.22■□□□□ 0.83
CACNA1FO60840 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CACNA1FO60840 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 OARD1-208ENST00000469104 704 ntTSL 2 BASIC20.22■□□□□ 0.83
CACNA1FO60840 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC20.22■□□□□ 0.83
CACNA1FO60840 AC190387.1-201ENST00000551683 408 ntBASIC20.22■□□□□ 0.83
CACNA1FO60840 MIR3197-201ENST00000582241 73 ntBASIC20.22■□□□□ 0.83
CACNA1FO60840 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC20.22■□□□□ 0.83
CACNA1FO60840 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
CACNA1FO60840 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC20.22■□□□□ 0.83
CACNA1FO60840 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 STIM2-202ENST00000465503 3613 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
CACNA1FO60840 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1FO60840 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1FO60840 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1FO60840 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1FO60840 AC023310.3-201ENST00000557027 670 ntBASIC20.21■□□□□ 0.83
CACNA1FO60840 AC100756.1-201ENST00000562736 682 ntBASIC20.21■□□□□ 0.83
CACNA1FO60840 AC138749.3-201ENST00000567691 622 ntBASIC20.21■□□□□ 0.83
CACNA1FO60840 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC20.21■□□□□ 0.83
CACNA1FO60840 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC20.21■□□□□ 0.83
CACNA1FO60840 AC116165.1-201ENST00000611806 668 ntBASIC20.21■□□□□ 0.83
CACNA1FO60840 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1FO60840 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC20.21■□□□□ 0.83
CACNA1FO60840 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
CACNA1FO60840 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms