Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 SPTLC1P1-201ENST00000447199 261 ntBASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 AC006116.8-201ENST00000587004 987 ntTSL 2 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 SNHG28-203ENST00000621242 708 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 AC005915.1-201ENST00000624912 2018 ntBASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 HNRNPA3-201ENST00000392524 2067 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 SATB2-202ENST00000417098 5730 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 ATAD3A-207ENST00000536055 2332 ntTSL 2 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 AC006277.1-201ENST00000624348 1610 ntBASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 CAMK2D-201ENST00000296402 5820 ntAPPRIS P3 TSL 5 BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
TM9SF3Q9HD45 AD000671.3-202ENST00000591091 1712 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TM9SF3Q9HD45 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
TM9SF3Q9HD45 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TM9SF3Q9HD45 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
TM9SF3Q9HD45 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.33■□□□□ 0.21
TM9SF3Q9HD45 ANTXRL-206ENST00000622632 1964 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.21
TM9SF3Q9HD45 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TM9SF3Q9HD45 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
TM9SF3Q9HD45 CETN4P-206ENST00000642099 2168 ntBASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 IQCF3-201ENST00000437810 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 PAX5-207ENST00000446742 885 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 AC009477.1-201ENST00000452936 217 ntBASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 REEP4-207ENST00000523293 913 ntTSL 3 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 CR383656.12-201ENST00000549567 513 ntBASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 PPHLN1-221ENST00000552761 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 AL596325.1-201ENST00000563991 1082 ntBASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 AC013467.2-201ENST00000605472 835 ntBASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 AL589739.1-201ENST00000607720 493 ntBASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 TEX28P1-201ENST00000613479 1221 ntBASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 TEX28P2-201ENST00000617764 1221 ntBASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 CA12-203ENST00000422263 2556 ntTSL 2 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 SMUG1-209ENST00000505128 2607 ntTSL 2 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 BVES-202ENST00000336775 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
TM9SF3Q9HD45 CICP6-201ENST00000457191 2729 ntBASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 CALY-202ENST00000368555 783 ntTSL 2 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 DNMT3A-205ENST00000402667 2300 ntAPPRIS ALT1 TSL 5 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 IRF1-202ENST00000405885 2061 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 FBXO22-202ENST00000453211 1486 ntTSL 2 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 RN7SL692P-201ENST00000464677 288 ntBASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
TM9SF3Q9HD45 AC098859.1-201ENST00000502915 1238 ntBASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms