Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 DENND3-201ENST00000262585 5438 ntAPPRIS P2 TSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 ADGRB2-206ENST00000398556 4879 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 U82695.1-201ENST00000635752 1889 ntBASIC15.85■□□□□ 0.13
LMX1AQ8TE12 CMA1-201ENST00000206446 633 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 NMU-201ENST00000264218 816 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 RTN4RL2-202ENST00000395120 582 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 SPDYE17-201ENST00000412399 783 ntBASIC15.85■□□□□ 0.13
LMX1AQ8TE12 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 RASL12-203ENST00000434605 982 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 TEX48-202ENST00000612244 662 ntTSL 3 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 MIR6069-201ENST00000620069 79 ntBASIC15.85■□□□□ 0.13
LMX1AQ8TE12 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 SLC39A13-202ENST00000362021 2296 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 AC012313.1-201ENST00000593393 3059 ntBASIC15.85■□□□□ 0.13
LMX1AQ8TE12 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 PSMD12-202ENST00000357146 2437 ntTSL 2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 ITGB7-202ENST00000422257 2791 ntAPPRIS P1 TSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC15.85■□□□□ 0.13
LMX1AQ8TE12 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 NFATC4-215ENST00000554661 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 ALDH3B1-204ENST00000614849 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 RNF216P1-203ENST00000404404 2427 ntBASIC15.84■□□□□ 0.13
LMX1AQ8TE12 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 C12orf10-201ENST00000267103 1192 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 DFFBP1-201ENST00000433250 979 ntBASIC15.84■□□□□ 0.13
LMX1AQ8TE12 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 SPDYE18-201ENST00000510091 1050 ntBASIC15.84■□□□□ 0.13
LMX1AQ8TE12 SDHAP3-202ENST00000515467 728 ntBASIC15.84■□□□□ 0.13
LMX1AQ8TE12 RHBDL2-203ENST00000540558 697 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 AC091544.3-201ENST00000556424 531 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 PIMREG-202ENST00000570337 891 ntTSL 5 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 PIMREG-203ENST00000571373 1002 ntTSL 3 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 PAM16-215ENST00000577031 548 ntTSL 4 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 AC027575.2-201ENST00000585258 1295 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 MRNIP-225ENST00000610475 810 ntTSL 5 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 UBALD1-205ENST00000590891 2641 ntBASIC15.84■□□□□ 0.13
LMX1AQ8TE12 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 SSFA2-201ENST00000320370 4965 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 AGBL5-202ENST00000360131 3177 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 EML3-201ENST00000278845 3017 ntAPPRIS ALT1 TSL 5 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC15.84■□□□□ 0.13
LMX1AQ8TE12 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC15.83■□□□□ 0.13
LMX1AQ8TE12 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC15.83■□□□□ 0.13
LMX1AQ8TE12 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.13
LMX1AQ8TE12 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
LMX1AQ8TE12 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms