Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 TBCEL-205ENST00000529397 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
VCANP13611 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC16.61■□□□□ 0.25
VCANP13611 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC16.61■□□□□ 0.25
VCANP13611 TMEM91-211ENST00000544232 725 ntTSL 3 BASIC16.61■□□□□ 0.25
VCANP13611 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.61■□□□□ 0.25
VCANP13611 AL137026.1-201ENST00000624407 503 ntTSL 4 BASIC16.61■□□□□ 0.25
VCANP13611 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC16.61■□□□□ 0.25
VCANP13611 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
VCANP13611 NSFL1C-206ENST00000476071 2800 ntTSL 5 BASIC16.61■□□□□ 0.25
VCANP13611 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VCANP13611 MEPCE-201ENST00000310512 3030 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCANP13611 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VCANP13611 KRTAP19-9P-201ENST00000421795 191 ntBASIC16.6■□□□□ 0.25
VCANP13611 AC027139.1-201ENST00000565286 951 ntBASIC16.6■□□□□ 0.25
VCANP13611 MIR4492-201ENST00000581627 80 ntBASIC16.6■□□□□ 0.25
VCANP13611 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC16.6■□□□□ 0.25
VCANP13611 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC16.6■□□□□ 0.25
VCANP13611 AC132192.2-201ENST00000596206 1147 ntBASIC16.6■□□□□ 0.25
VCANP13611 CPSF3-201ENST00000238112 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCANP13611 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCANP13611 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.6■□□□□ 0.25
VCANP13611 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC16.6■□□□□ 0.25
VCANP13611 C2orf54-203ENST00000402775 1958 ntAPPRIS ALT2 TSL 2 BASIC16.6■□□□□ 0.25
VCANP13611 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
VCANP13611 UNC5D-202ENST00000404895 3252 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCANP13611 PGAP2-214ENST00000465307 1100 ntTSL 2 BASIC16.6■□□□□ 0.25
VCANP13611 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC16.6■□□□□ 0.25
VCANP13611 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.6■□□□□ 0.25
VCANP13611 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC16.6■□□□□ 0.25
VCANP13611 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC16.6■□□□□ 0.25
VCANP13611 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC16.6■□□□□ 0.25
VCANP13611 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCANP13611 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
VCANP13611 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
VCANP13611 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
VCANP13611 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC16.6■□□□□ 0.25
VCANP13611 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.6■□□□□ 0.25
VCANP13611 C2orf27AP3-201ENST00000434123 579 ntBASIC16.6■□□□□ 0.25
VCANP13611 HIST3H2BA-201ENST00000436555 524 ntBASIC16.6■□□□□ 0.25
VCANP13611 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC16.6■□□□□ 0.25
VCANP13611 AHRR-211ENST00000515206 462 ntTSL 5 BASIC16.6■□□□□ 0.25
VCANP13611 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.6■□□□□ 0.25
VCANP13611 AL354718.3-201ENST00000616414 581 ntBASIC16.6■□□□□ 0.25
VCANP13611 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC16.6■□□□□ 0.25
VCANP13611 CR382287.1-201ENST00000623954 586 ntBASIC16.6■□□□□ 0.25
VCANP13611 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC16.6■□□□□ 0.25
VCANP13611 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
VCANP13611 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC16.59■□□□□ 0.25
VCANP13611 TPR-209ENST00000613151 2478 ntTSL 5 BASIC16.59■□□□□ 0.25
VCANP13611 CLDN7-201ENST00000360325 1542 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 SNHG1-213ENST00000540725 1374 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 ABCF3-203ENST00000429586 2624 ntAPPRIS P2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.59■□□□□ 0.25
VCANP13611 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 CDK2AP2P3-201ENST00000422476 372 ntBASIC16.59■□□□□ 0.25
VCANP13611 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 BRI3P1-201ENST00000440440 378 ntBASIC16.59■□□□□ 0.25
VCANP13611 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.59■□□□□ 0.25
VCANP13611 FAM32A-204ENST00000588367 798 ntTSL 2 BASIC16.59■□□□□ 0.25
VCANP13611 LINC00595-217ENST00000635545 549 ntTSL 4 BASIC16.59■□□□□ 0.25
VCANP13611 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.59■□□□□ 0.25
VCANP13611 XXYLT1-201ENST00000310380 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 PRR5-ARHGAP8-201ENST00000352766 2043 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VCANP13611 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 STARD13-205ENST00000439831 945 ntTSL 2 BASIC16.59■□□□□ 0.25
VCANP13611 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 AC104596.2-201ENST00000512793 793 ntBASIC16.59■□□□□ 0.25
VCANP13611 AC009119.2-201ENST00000561562 723 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
VCANP13611 AP001350.2-201ENST00000625104 1094 ntBASIC16.59■□□□□ 0.25
VCANP13611 PARD3-206ENST00000374776 3389 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC16.59■□□□□ 0.25
VCANP13611 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VCANP13611 LINC00304-203ENST00000565008 1864 ntBASIC16.59■□□□□ 0.25
VCANP13611 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC16.59■□□□□ 0.25
VCANP13611 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 CCDC120-204ENST00000597275 2752 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
VCANP13611 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 ZDHHC4-204ENST00000396709 1485 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
VCANP13611 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
VCANP13611 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC16.58■□□□□ 0.25
VCANP13611 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.25
VCANP13611 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
VCANP13611 C8orf88-201ENST00000517562 894 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.25
VCANP13611 AC012645.3-203ENST00000567153 520 ntTSL 2 BASIC16.58■□□□□ 0.25
VCANP13611 BRI3BPP1-201ENST00000594224 787 ntBASIC16.58■□□□□ 0.25
VCANP13611 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.58■□□□□ 0.25
VCANP13611 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
VCANP13611 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.25
VCANP13611 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
VCANP13611 ZDHHC4-201ENST00000335965 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
VCANP13611 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC16.58■□□□□ 0.24
VCANP13611 SNHG17-208ENST00000456953 546 ntTSL 3 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms