Protein–RNA interactions for Protein: O43490

PROM1, Prominin-1, humanhuman

Predictions only

Length 865 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1O43490 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
PROM1O43490 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.56■□□□□ 0.08
PROM1O43490 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 CTIF-201ENST00000256413 5750 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC15.56■□□□□ 0.08
PROM1O43490 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC15.56■□□□□ 0.08
PROM1O43490 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
PROM1O43490 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
PROM1O43490 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC15.56■□□□□ 0.08
PROM1O43490 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.55■□□□□ 0.08
PROM1O43490 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 COL18A1-203ENST00000359759 6586 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PROM1O43490 CTSB-201ENST00000345125 2028 ntAPPRIS P1 TSL 5 BASIC15.55■□□□□ 0.08
PROM1O43490 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 MFSD2B-202ENST00000406420 1528 ntAPPRIS P2 TSL 5 BASIC15.55■□□□□ 0.08
PROM1O43490 CLDN14-201ENST00000342108 1453 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 FHAD1-205ENST00000375997 1459 ntTSL 3 BASIC15.55■□□□□ 0.08
PROM1O43490 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 AKAP8P1-201ENST00000434743 1349 ntBASIC15.55■□□□□ 0.08
PROM1O43490 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 YBX2P1-201ENST00000394192 760 ntBASIC15.55■□□□□ 0.08
PROM1O43490 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.55■□□□□ 0.08
PROM1O43490 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.55■□□□□ 0.08
PROM1O43490 AL671277.1-201ENST00000429656 993 ntBASIC15.55■□□□□ 0.08
PROM1O43490 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC15.55■□□□□ 0.08
PROM1O43490 RARRES2P8-201ENST00000566335 367 ntBASIC15.55■□□□□ 0.08
PROM1O43490 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.55■□□□□ 0.08
PROM1O43490 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.55■□□□□ 0.08
PROM1O43490 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.55■□□□□ 0.08
PROM1O43490 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
PROM1O43490 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 MGAT1-201ENST00000307826 2761 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC15.55■□□□□ 0.08
PROM1O43490 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC15.55■□□□□ 0.08
PROM1O43490 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
PROM1O43490 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
PROM1O43490 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
PROM1O43490 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC15.55■□□□□ 0.08
PROM1O43490 CCDC90B-203ENST00000525503 1919 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
PROM1O43490 SLC39A8-201ENST00000356736 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 REXO1L8P-201ENST00000604378 1897 ntBASIC15.54■□□□□ 0.08
PROM1O43490 MIOS-202ENST00000405785 3095 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PROM1O43490 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 TBC1D9B-201ENST00000355235 5119 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
PROM1O43490 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 PKLR-202ENST00000392414 2479 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 PELP1-208ENST00000572293 5272 ntAPPRIS P2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.54■□□□□ 0.08
PROM1O43490 PPIC-201ENST00000306442 1380 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC15.54■□□□□ 0.08
PROM1O43490 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 PNRC2-202ENST00000374468 814 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
PROM1O43490 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
PROM1O43490 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 AL355306.1-201ENST00000415580 579 ntBASIC15.54■□□□□ 0.08
PROM1O43490 SAPCD1-209ENST00000425424 820 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PROM1O43490 MKNK2P1-201ENST00000437526 628 ntBASIC15.54■□□□□ 0.08
PROM1O43490 AC093724.1-201ENST00000448659 1027 ntBASIC15.54■□□□□ 0.08
PROM1O43490 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC15.54■□□□□ 0.08
PROM1O43490 MRPL20-203ENST00000482352 1049 ntTSL 2 BASIC15.54■□□□□ 0.08
PROM1O43490 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC15.54■□□□□ 0.08
PROM1O43490 FAM86C2P-203ENST00000528684 1004 ntBASIC15.54■□□□□ 0.08
PROM1O43490 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.54■□□□□ 0.08
PROM1O43490 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
PROM1O43490 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
PROM1O43490 AL355385.1-201ENST00000606123 409 ntBASIC15.54■□□□□ 0.08
PROM1O43490 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC15.54■□□□□ 0.08
PROM1O43490 CITED2-204ENST00000618718 901 ntTSL 2 BASIC15.54■□□□□ 0.08
PROM1O43490 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.54■□□□□ 0.08
PROM1O43490 UBR3-201ENST00000272793 8005 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PROM1O43490 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PROM1O43490 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC15.54■□□□□ 0.08
PROM1O43490 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC15.54■□□□□ 0.08
PROM1O43490 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms