Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.5■□□□□ 0.39
FOXN3O00409 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
FOXN3O00409 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
FOXN3O00409 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 UNG-201ENST00000242576 2071 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC17.49■□□□□ 0.39
FOXN3O00409 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 DUSP13-210ENST00000491677 1770 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC17.49■□□□□ 0.39
FOXN3O00409 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
FOXN3O00409 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC17.49■□□□□ 0.39
FOXN3O00409 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 KLHL7-201ENST00000322275 969 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 IMP4-203ENST00000409935 958 ntTSL 5 BASIC17.49■□□□□ 0.39
FOXN3O00409 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC17.49■□□□□ 0.39
FOXN3O00409 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC17.49■□□□□ 0.39
FOXN3O00409 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.49■□□□□ 0.39
FOXN3O00409 PRYP6-201ENST00000514804 343 ntBASIC17.49■□□□□ 0.39
FOXN3O00409 PGAM5P1-201ENST00000518923 814 ntBASIC17.49■□□□□ 0.39
FOXN3O00409 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.49■□□□□ 0.39
FOXN3O00409 AC002347.1-201ENST00000569543 541 ntBASIC17.49■□□□□ 0.39
FOXN3O00409 AC091812.2-201ENST00000619081 385 ntBASIC17.49■□□□□ 0.39
FOXN3O00409 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC17.49■□□□□ 0.39
FOXN3O00409 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
FOXN3O00409 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
FOXN3O00409 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.49■□□□□ 0.39
FOXN3O00409 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 GMPPB-201ENST00000308375 3217 ntTSL 2 BASIC17.49■□□□□ 0.39
FOXN3O00409 ADGRA1-AS1-201ENST00000366099 3236 ntBASIC17.49■□□□□ 0.39
FOXN3O00409 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
FOXN3O00409 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXN3O00409 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXN3O00409 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 ACE-203ENST00000413513 2237 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXN3O00409 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 RASGRP2-201ENST00000354024 2310 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 AC105917.1-201ENST00000506637 2539 ntBASIC17.48■□□□□ 0.39
FOXN3O00409 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXN3O00409 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 POLD2P1-201ENST00000511220 997 ntBASIC17.48■□□□□ 0.39
FOXN3O00409 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC17.48■□□□□ 0.39
FOXN3O00409 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC17.48■□□□□ 0.39
FOXN3O00409 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC17.48■□□□□ 0.39
FOXN3O00409 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 AC092902.6-201ENST00000641783 218 ntBASIC17.48■□□□□ 0.39
FOXN3O00409 NEO1-206ENST00000558964 4441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC17.48■□□□□ 0.39
FOXN3O00409 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 AC008677.1-201ENST00000519230 1561 ntBASIC17.48■□□□□ 0.39
FOXN3O00409 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.48■□□□□ 0.39
FOXN3O00409 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC17.48■□□□□ 0.39
FOXN3O00409 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC17.48■□□□□ 0.39
FOXN3O00409 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
FOXN3O00409 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC17.47■□□□□ 0.39
FOXN3O00409 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 SLC7A5-201ENST00000261622 4537 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 AC026412.1-203ENST00000507841 2338 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 ATP6V0E2-201ENST00000421974 2605 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 COBL-201ENST00000265136 5291 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 AL022342.1-201ENST00000400363 863 ntBASIC17.47■□□□□ 0.39
FOXN3O00409 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 AL671277.1-201ENST00000429656 993 ntBASIC17.47■□□□□ 0.39
FOXN3O00409 KRT18P58-201ENST00000527480 1120 ntBASIC17.47■□□□□ 0.39
FOXN3O00409 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC17.47■□□□□ 0.39
FOXN3O00409 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 RARRES2P8-201ENST00000566335 367 ntBASIC17.47■□□□□ 0.39
FOXN3O00409 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
FOXN3O00409 CLEC18B-201ENST00000339953 1865 ntAPPRIS P2 TSL 1 (best) BASIC17.47■□□□□ 0.39
FOXN3O00409 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms