Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 NRBP1-201ENST00000233557 2887 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 HDDC3-201ENST00000330334 1047 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 PMS2P4-201ENST00000412466 1052 ntBASIC16.15■□□□□ 0.18
MKS1Q9NXB0 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 KRT18P21-201ENST00000515767 1272 ntBASIC16.15■□□□□ 0.18
MKS1Q9NXB0 OR7E47P-204ENST00000575924 449 ntBASIC16.15■□□□□ 0.18
MKS1Q9NXB0 FAM220A-205ENST00000578372 207 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 AC087481.3-201ENST00000602886 1894 ntBASIC16.15■□□□□ 0.18
MKS1Q9NXB0 SLC9A3-AS1-204ENST00000606288 791 ntTSL 2 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 AL365330.1-201ENST00000607459 531 ntBASIC16.15■□□□□ 0.18
MKS1Q9NXB0 Metazoa_SRP.33-201ENST00000613468 285 ntBASIC16.15■□□□□ 0.18
MKS1Q9NXB0 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 S1PR2-201ENST00000590320 3582 ntAPPRIS P1 TSL 3 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 PKD1L2-209ENST00000531391 1488 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 C2orf27A-205ENST00000624391 1335 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 TMEM143-202ENST00000377431 1960 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.15■□□□□ 0.18
MKS1Q9NXB0 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
MKS1Q9NXB0 PTPRN2-205ENST00000409483 4711 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.18
MKS1Q9NXB0 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 MPPED1-202ENST00000417669 3657 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 VAV2-202ENST00000371851 5101 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 TPM1-203ENST00000317516 738 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 TRIM36-203ENST00000379618 693 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 TPM1-218ENST00000559281 851 ntTSL 5 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 FGF11-204ENST00000575235 928 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 AL121772.3-201ENST00000610840 674 ntBASIC16.14■□□□□ 0.17
MKS1Q9NXB0 C1orf43-210ENST00000640799 1287 ntTSL 5 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 C19orf68-203ENST00000614654 3588 ntAPPRIS P2 TSL 5 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 CDCP2-201ENST00000371330 2723 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 SLC36A1-207ENST00000520701 2005 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.14■□□□□ 0.17
MKS1Q9NXB0 INPP4A-202ENST00000409016 9996 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 UBAC2-203ENST00000403766 1375 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 ZNF252P-AS1-201ENST00000527067 3236 ntBASIC16.13■□□□□ 0.17
MKS1Q9NXB0 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 FAM184B-201ENST00000265018 6622 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 HMGA1P7-201ENST00000406908 502 ntBASIC16.13■□□□□ 0.17
MKS1Q9NXB0 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 MRPL28-203ENST00000429738 310 ntTSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 FAM185BP-201ENST00000443595 716 ntBASIC16.13■□□□□ 0.17
MKS1Q9NXB0 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 EHF-205ENST00000527935 557 ntTSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 IRF8-202ENST00000562492 946 ntTSL 3 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 CYB561-216ENST00000582297 897 ntTSL 3 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 ZNF445-205ENST00000617032 1291 ntTSL 5 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 CD81-AS1-201ENST00000413483 1460 ntTSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 AL953897.1-201ENST00000376620 1868 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 NFATC4-201ENST00000250373 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
MKS1Q9NXB0 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms