Protein–RNA interactions for Protein: P78423

CX3CL1, Fractalkine, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CL1P78423 AC012363.1-201ENST00000455707 575 ntTSL 4 BASIC13.25□□□□□ -0.29
CX3CL1P78423 MTRF1LP2-201ENST00000506027 1122 ntBASIC13.25□□□□□ -0.29
CX3CL1P78423 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC13.25□□□□□ -0.29
CX3CL1P78423 IL18BP-211ENST00000531053 853 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CX3CL1P78423 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.25□□□□□ -0.29
CX3CL1P78423 TRMT112-203ENST00000535750 823 ntTSL 2 BASIC13.25□□□□□ -0.29
CX3CL1P78423 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC13.25□□□□□ -0.29
CX3CL1P78423 AC140113.2-201ENST00000604370 208 ntBASIC13.25□□□□□ -0.29
CX3CL1P78423 FAM197Y3-203ENST00000618346 717 ntBASIC13.25□□□□□ -0.29
CX3CL1P78423 AC004877.2-201ENST00000623941 599 ntBASIC13.25□□□□□ -0.29
CX3CL1P78423 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC13.25□□□□□ -0.29
CX3CL1P78423 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 AC024909.3-201ENST00000611513 2257 ntBASIC13.25□□□□□ -0.29
CX3CL1P78423 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CX3CL1P78423 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 SLC29A1-206ENST00000371755 2112 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CX3CL1P78423 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 ORMDL1-203ENST00000392350 2009 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 ESPNL-201ENST00000343063 4836 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
CX3CL1P78423 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 KDM4F-201ENST00000545950 1917 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
CX3CL1P78423 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
CX3CL1P78423 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC13.25□□□□□ -0.29
CX3CL1P78423 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
CX3CL1P78423 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
CX3CL1P78423 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC13.24□□□□□ -0.29
CX3CL1P78423 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 PAUPAR-201ENST00000630360 2965 ntBASIC13.24□□□□□ -0.29
CX3CL1P78423 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC13.24□□□□□ -0.29
CX3CL1P78423 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC13.24□□□□□ -0.29
CX3CL1P78423 AC025580.3-201ENST00000617932 1424 ntBASIC13.24□□□□□ -0.29
CX3CL1P78423 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC13.24□□□□□ -0.29
CX3CL1P78423 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 BCAR1-209ENST00000546196 1340 ntBASIC13.24□□□□□ -0.29
CX3CL1P78423 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
CX3CL1P78423 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.24□□□□□ -0.29
CX3CL1P78423 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC13.24□□□□□ -0.29
CX3CL1P78423 DDT-204ENST00000404092 805 ntTSL 3 BASIC13.24□□□□□ -0.29
CX3CL1P78423 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
CX3CL1P78423 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC13.24□□□□□ -0.29
CX3CL1P78423 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC13.24□□□□□ -0.29
CX3CL1P78423 CTNNBIP1-203ENST00000377263 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC13.24□□□□□ -0.29
CX3CL1P78423 AC006460.2-201ENST00000638173 4744 ntTSL 5 BASIC13.24□□□□□ -0.29
CX3CL1P78423 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC13.24□□□□□ -0.29
CX3CL1P78423 MAPKAP1-206ENST00000373511 3252 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
CX3CL1P78423 HNRNPLL-212ENST00000608859 3035 ntTSL 5 BASIC13.23□□□□□ -0.29
CX3CL1P78423 ARAP2-201ENST00000303965 7514 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CX3CL1P78423 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC13.23□□□□□ -0.29
CX3CL1P78423 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC13.23□□□□□ -0.29
CX3CL1P78423 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CX3CL1P78423 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC13.23□□□□□ -0.29
CX3CL1P78423 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC13.23□□□□□ -0.29
CX3CL1P78423 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 P2RX5-TAX1BP3-201ENST00000550383 5905 ntAPPRIS P1 TSL 2 BASIC13.23□□□□□ -0.29
CX3CL1P78423 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC13.23□□□□□ -0.29
CX3CL1P78423 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC13.23□□□□□ -0.29
CX3CL1P78423 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.23□□□□□ -0.29
CX3CL1P78423 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC13.23□□□□□ -0.29
CX3CL1P78423 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC13.23□□□□□ -0.29
CX3CL1P78423 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.23□□□□□ -0.29
CX3CL1P78423 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC13.23□□□□□ -0.29
CX3CL1P78423 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms