Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.15■□□□□ 0.02
RNF4P78317 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC15.15■□□□□ 0.02
RNF4P78317 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
RNF4P78317 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
RNF4P78317 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
RNF4P78317 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 AC124067.4-201ENST00000519691 2379 ntBASIC15.14■□□□□ 0.01
RNF4P78317 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 NFATC4-208ENST00000553708 5367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC15.14■□□□□ 0.01
RNF4P78317 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC15.14■□□□□ 0.01
RNF4P78317 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC15.14■□□□□ 0.01
RNF4P78317 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
RNF4P78317 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
RNF4P78317 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 CNN2P2-201ENST00000443536 909 ntBASIC15.14■□□□□ 0.01
RNF4P78317 CTDSP1-204ENST00000443891 1109 ntTSL 3 BASIC15.14■□□□□ 0.01
RNF4P78317 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC15.14■□□□□ 0.01
RNF4P78317 CNN2P3-201ENST00000450201 906 ntBASIC15.14■□□□□ 0.01
RNF4P78317 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC15.14■□□□□ 0.01
RNF4P78317 APBB2-208ENST00000504305 1274 ntTSL 5 BASIC15.14■□□□□ 0.01
RNF4P78317 AC015911.4-201ENST00000588022 1070 ntBASIC15.14■□□□□ 0.01
RNF4P78317 AC018529.1-201ENST00000613063 361 ntBASIC15.14■□□□□ 0.01
RNF4P78317 MIR6080-201ENST00000617359 66 ntBASIC15.14■□□□□ 0.01
RNF4P78317 AL136317.3-201ENST00000618497 906 ntBASIC15.14■□□□□ 0.01
RNF4P78317 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC15.14■□□□□ 0.01
RNF4P78317 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC15.14■□□□□ 0.01
RNF4P78317 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC15.14■□□□□ 0.01
RNF4P78317 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 AC008677.1-201ENST00000519230 1561 ntBASIC15.14■□□□□ 0.01
RNF4P78317 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 PRX-202ENST00000324001 4855 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 WDR6-202ENST00000415265 1883 ntTSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 PTK7-202ENST00000230419 4272 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.14■□□□□ 0.01
RNF4P78317 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
RNF4P78317 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
RNF4P78317 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 MAGEA2-207ENST00000620710 1947 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 C12orf56-207ENST00000543942 3242 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RNF4P78317 NOVA2-201ENST00000263257 7803 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 FAF1-202ENST00000396153 6817 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 DAB2IP-205ENST00000408936 6784 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
RNF4P78317 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 PNO1-201ENST00000263657 2286 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
RNF4P78317 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC15.13■□□□□ 0.01
RNF4P78317 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
RNF4P78317 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
RNF4P78317 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.13■□□□□ 0.01
RNF4P78317 IRAK1-204ENST00000393687 2049 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC15.13■□□□□ 0.01
RNF4P78317 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC15.13■□□□□ 0.01
RNF4P78317 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 PRRT3-AS1-201ENST00000431558 614 ntTSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 FAM86GP-201ENST00000448322 971 ntBASIC15.13■□□□□ 0.01
RNF4P78317 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC15.13■□□□□ 0.01
RNF4P78317 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
RNF4P78317 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC15.13■□□□□ 0.01
RNF4P78317 RFPL4AP1-201ENST00000530883 850 ntBASIC15.13■□□□□ 0.01
RNF4P78317 RPL28-205ENST00000558131 444 ntTSL 5 BASIC15.13■□□□□ 0.01
RNF4P78317 AC027796.2-201ENST00000575326 344 ntBASIC15.13■□□□□ 0.01
RNF4P78317 AC024267.1-201ENST00000582320 895 ntBASIC15.13■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 44.7 ms