Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 BORCS5-202ENST00000314565 4840 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 LPAR1-203ENST00000374431 3637 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HMGB3O15347 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC13.26□□□□□ -0.29
HMGB3O15347 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 ACOT12-201ENST00000307624 2086 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 ABTB1-202ENST00000453791 1961 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 PDE9A-203ENST00000335440 1728 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 MRPL4-203ENST00000393733 1620 ntTSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 NLRC3-202ENST00000359128 6401 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 CDIPT-209ENST00000569956 1532 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 FUT8-AS1-201ENST00000621019 1521 ntBASIC13.25□□□□□ -0.29
HMGB3O15347 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 PPA2-202ENST00000348706 1414 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 KRT8P10-201ENST00000450021 1447 ntBASIC13.25□□□□□ -0.29
HMGB3O15347 CDK2AP2-201ENST00000301488 1378 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 ZDHHC20-201ENST00000320220 1351 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 TRIM36-202ENST00000379617 1322 ntTSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 SFTPD-201ENST00000372292 1281 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 HMGA1P5-201ENST00000412453 271 ntBASIC13.25□□□□□ -0.29
HMGB3O15347 ECEL1P3-201ENST00000427961 737 ntBASIC13.25□□□□□ -0.29
HMGB3O15347 BPHL-208ENST00000434640 1186 ntTSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC13.25□□□□□ -0.29
HMGB3O15347 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 GPX4-207ENST00000589115 812 ntTSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 LITAF-220ENST00000620789 692 ntTSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 ITM2C-210ENST00000620962 501 ntBASIC13.25□□□□□ -0.29
HMGB3O15347 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 PITPNB-211ENST00000634017 1017 ntAPPRIS ALT1 TSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 ANKRD20A8P-203ENST00000641373 517 ntBASIC13.25□□□□□ -0.29
HMGB3O15347 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 ZNF283-209ENST00000618787 5713 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 PTPRVP-205ENST00000641549 5067 ntBASIC13.25□□□□□ -0.29
HMGB3O15347 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 DGCR5-203ENST00000438934 5492 ntTSL 5 BASIC13.25□□□□□ -0.29
HMGB3O15347 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 PC-204ENST00000524491 1714 ntTSL 2 BASIC13.25□□□□□ -0.29
HMGB3O15347 DAND5-202ENST00000585548 1731 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HMGB3O15347 CALHM3-201ENST00000369783 1652 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC13.24□□□□□ -0.29
HMGB3O15347 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
HMGB3O15347 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC13.24□□□□□ -0.29
HMGB3O15347 AMT-233ENST00000636522 1620 ntTSL 2 BASIC13.24□□□□□ -0.29
HMGB3O15347 AL049757.1-201ENST00000616842 1596 ntBASIC13.24□□□□□ -0.29
HMGB3O15347 KIAA1841-201ENST00000295031 3116 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 CACNA1G-203ENST00000358244 7030 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 TNRC6C-207ENST00000588847 8527 ntAPPRIS P4 TSL 5 BASIC13.24□□□□□ -0.29
HMGB3O15347 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC13.24□□□□□ -0.29
HMGB3O15347 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC13.24□□□□□ -0.29
HMGB3O15347 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 CAMSAP3-202ENST00000446248 4179 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 TIGAR-201ENST00000179259 2782 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC13.24□□□□□ -0.29
HMGB3O15347 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 AGPAT1-202ENST00000375104 2017 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HMGB3O15347 TERT-201ENST00000310581 4018 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC13.24□□□□□ -0.29
HMGB3O15347 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 CHTOP-202ENST00000368687 1094 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 LINC00620-201ENST00000419618 996 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC13.24□□□□□ -0.29
HMGB3O15347 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.24□□□□□ -0.29
HMGB3O15347 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC13.24□□□□□ -0.29
HMGB3O15347 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC13.24□□□□□ -0.29
HMGB3O15347 MIR4785-201ENST00000585005 73 ntBASIC13.24□□□□□ -0.29
HMGB3O15347 LDLRAD4-201ENST00000359446 8486 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC13.24□□□□□ -0.29
HMGB3O15347 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC13.24□□□□□ -0.29
HMGB3O15347 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 92.9 ms