Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 MRPL2-208ENST00000489623 570 ntTSL 2 BASIC14□□□□□ -0.17
SDCBPO00560 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDCBPO00560 AF238378.1-201ENST00000526806 358 ntBASIC14□□□□□ -0.17
SDCBPO00560 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC14□□□□□ -0.17
SDCBPO00560 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC14□□□□□ -0.17
SDCBPO00560 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC14□□□□□ -0.17
SDCBPO00560 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14□□□□□ -0.17
SDCBPO00560 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDCBPO00560 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
SDCBPO00560 CEACAM3-208ENST00000630848 1110 ntAPPRIS ALT2 TSL 5 BASIC14□□□□□ -0.17
SDCBPO00560 ABBA01031661.1-201ENST00000634362 1253 ntBASIC14□□□□□ -0.17
SDCBPO00560 SNX33P1-201ENST00000592116 1762 ntBASIC14□□□□□ -0.17
SDCBPO00560 TRA2A-202ENST00000392502 2229 ntAPPRIS ALT2 TSL 2 BASIC14□□□□□ -0.17
SDCBPO00560 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC14□□□□□ -0.17
SDCBPO00560 ZNF84-202ENST00000392319 7020 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
SDCBPO00560 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
SDCBPO00560 AL161772.1-201ENST00000610494 4412 ntBASIC14□□□□□ -0.17
SDCBPO00560 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDCBPO00560 AL031731.1-201ENST00000642131 2094 ntBASIC14□□□□□ -0.17
SDCBPO00560 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDCBPO00560 GGT6-204ENST00000574154 2482 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
SDCBPO00560 INPPL1-207ENST00000538751 4656 ntTSL 1 (best) BASIC14□□□□□ -0.17
SDCBPO00560 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SDCBPO00560 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 REXO1L8P-201ENST00000604378 1897 ntBASIC13.99□□□□□ -0.17
SDCBPO00560 PTBP1-202ENST00000350092 3069 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 PDP1-201ENST00000297598 4272 ntAPPRIS P3 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SDCBPO00560 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 AC002310.6-201ENST00000624451 1377 ntBASIC13.99□□□□□ -0.17
SDCBPO00560 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 FLT3LG-204ENST00000595510 1301 ntTSL 5 BASIC13.99□□□□□ -0.17
SDCBPO00560 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC13.99□□□□□ -0.17
SDCBPO00560 TUBB3-205ENST00000554336 903 ntTSL 3 BASIC13.99□□□□□ -0.17
SDCBPO00560 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC13.99□□□□□ -0.17
SDCBPO00560 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 LINC01607-201ENST00000607172 621 ntTSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 AC004706.3-202ENST00000621574 984 ntBASIC13.99□□□□□ -0.17
SDCBPO00560 MCRIP2-211ENST00000629534 341 ntTSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SDCBPO00560 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC13.99□□□□□ -0.17
SDCBPO00560 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 AP003680.1-201ENST00000598970 3660 ntBASIC13.99□□□□□ -0.17
SDCBPO00560 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 GMPPA-204ENST00000373908 1501 ntAPPRIS P1 TSL 5 BASIC13.99□□□□□ -0.17
SDCBPO00560 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
SDCBPO00560 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 DUSP18-201ENST00000334679 2479 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC13.99□□□□□ -0.17
SDCBPO00560 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 HARS-203ENST00000431330 1774 ntTSL 2 BASIC13.99□□□□□ -0.17
SDCBPO00560 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC13.99□□□□□ -0.17
SDCBPO00560 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 SHROOM2-201ENST00000380913 7447 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 TMEM30A-201ENST00000230461 4594 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 XRRA1-202ENST00000340360 5681 ntAPPRIS P1 TSL 5 BASIC13.98□□□□□ -0.17
SDCBPO00560 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 WDR1-205ENST00000502702 1691 ntTSL 5 BASIC13.98□□□□□ -0.17
SDCBPO00560 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC13.98□□□□□ -0.17
SDCBPO00560 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 TRIM46-211ENST00000611379 3082 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 CPEB2-209ENST00000538197 6878 ntAPPRIS P4 TSL 5 BASIC13.98□□□□□ -0.17
SDCBPO00560 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 EML1-201ENST00000262233 4535 ntAPPRIS P1 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
SDCBPO00560 MIR202HG-201ENST00000300167 384 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC13.98□□□□□ -0.17
SDCBPO00560 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC13.98□□□□□ -0.17
SDCBPO00560 AC134772.1-202ENST00000435578 549 ntTSL 4 BASIC13.98□□□□□ -0.17
SDCBPO00560 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC13.98□□□□□ -0.17
SDCBPO00560 ARTN-206ENST00000472435 402 ntTSL 3 BASIC13.98□□□□□ -0.17
SDCBPO00560 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC13.98□□□□□ -0.17
SDCBPO00560 AC073648.2-201ENST00000510116 352 ntBASIC13.98□□□□□ -0.17
SDCBPO00560 AC021087.4-201ENST00000563761 564 ntBASIC13.98□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms