Protein–RNA interactions for Protein: Q9UPQ7

PDZRN3, E3 ubiquitin-protein ligase PDZRN3, humanhuman

Predictions only

Length 1,066 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDZRN3Q9UPQ7 CD1B-201ENST00000368168 1395 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 AC092143.3-201ENST00000565150 1900 ntTSL 5 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 C20orf166-AS1-201ENST00000412495 2302 ntTSL 2 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 CICP6-201ENST00000457191 2729 ntBASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 SESN1-204ENST00000436639 3509 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 FO681492.1-201ENST00000623662 5321 ntAPPRIS P5 TSL 2 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 AC005052.1-201ENST00000625181 2492 ntBASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 AL353732.1-201ENST00000569618 1459 ntBASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 OR8S1-201ENST00000310194 1080 ntBASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 AP000842.3-202ENST00000569238 1080 ntBASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 AC005544.2-201ENST00000579138 229 ntTSL 5 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 AC025048.6-201ENST00000634326 1161 ntBASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 PCDHGA12-202ENST00000613314 2634 ntAPPRIS ALT2 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 ZFYVE19-203ENST00000355341 2775 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 TRIM39-201ENST00000376656 3338 ntAPPRIS P4 TSL 2 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 NAPA-AS1-201ENST00000593284 1753 ntTSL 2 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 AC107871.1-202ENST00000562767 3389 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
PDZRN3Q9UPQ7 LINC00887-203ENST00000429578 1717 ntTSL 2 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TTLL11-201ENST00000321582 3250 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 CACNA2D2-201ENST00000266039 5476 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 CAMKV-217ENST00000620470 1485 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 NME2P1-201ENST00000426182 414 ntBASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 RAB3A-202ENST00000464076 1253 ntTSL 2 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 PKD1P1-201ENST00000458669 6805 ntBASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 MATN3-202ENST00000421259 1443 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 PCDHA1-201ENST00000378133 2726 ntBASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 RAB23-202ENST00000468148 4837 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 NAT9-210ENST00000580301 1860 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 DZANK1-202ENST00000329494 1389 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 AL021920.2-201ENST00000624828 1351 ntBASIC21.09■□□□□ 0.97
PDZRN3Q9UPQ7 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 GCK-209ENST00000616242 2260 ntTSL 5 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 CLU-215ENST00000523500 2381 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 RUSC1-201ENST00000292254 2163 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 TBC1D10B-201ENST00000409939 3350 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 MTFR1L-218ENST00000526894 733 ntTSL 4 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 TNNT1-211ENST00000588426 683 ntTSL 5 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 KRT8P49-201ENST00000604166 1432 ntBASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 AL662799.1-202ENST00000614205 422 ntBASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PDZRN3Q9UPQ7 AGK-211ENST00000629555 2765 ntTSL 5 BASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 47 ms