Protein–RNA interactions for Protein: Q9P232

CNTN3, Contactin-3, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNTN3Q9P232 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 LAT2-204ENST00000398475 2453 ntAPPRIS P2 TSL 1 (best) BASIC17.56■□□□□ 0.4
CNTN3Q9P232 AC005052.1-201ENST00000625181 2492 ntBASIC17.56■□□□□ 0.4
CNTN3Q9P232 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
CNTN3Q9P232 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 JMJD4-206ENST00000615711 2591 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 WHAMMP3-203ENST00000621139 4494 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 SEC23A-203ENST00000545328 2734 ntTSL 2 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 RPL37AP1-201ENST00000412502 279 ntBASIC17.55■□□□□ 0.4
CNTN3Q9P232 AL080243.2-201ENST00000418783 582 ntBASIC17.55■□□□□ 0.4
CNTN3Q9P232 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 AL079307.3-201ENST00000556114 283 ntBASIC17.55■□□□□ 0.4
CNTN3Q9P232 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.55■□□□□ 0.4
CNTN3Q9P232 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 EXTL3-201ENST00000220562 6483 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CNTN3Q9P232 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 IGSF8-202ENST00000368086 2366 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 KCNA7-201ENST00000221444 4372 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 STOX1-201ENST00000298596 3377 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 RPS19-201ENST00000221975 500 ntTSL 3 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 AL022316.1-201ENST00000428765 572 ntTSL 4 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 UGT1A2P-201ENST00000454886 866 ntBASIC17.54■□□□□ 0.4
CNTN3Q9P232 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 CCNYL1-201ENST00000295414 3767 ntTSL 5 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 PIGT-221ENST00000638594 1835 ntTSL 5 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 ELAC2-203ENST00000426905 2671 ntTSL 2 BASIC17.54■□□□□ 0.4
CNTN3Q9P232 DLC1-203ENST00000358919 4392 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CNTN3Q9P232 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 HMBS-209ENST00000537841 1559 ntTSL 5 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 CA12-203ENST00000422263 2556 ntTSL 2 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC17.53■□□□□ 0.4
CNTN3Q9P232 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CNTN3Q9P232 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.8 ms