Protein–RNA interactions for Protein: Q9BQ65

USB1, U6 snRNA phosphodiesterase, humanhuman

Known RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USB1Q9BQ65 CNN2P11-201ENST00000429351 262 ntBASIC14.75□□□□□ -0.05
USB1Q9BQ65 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 STARD13-205ENST00000439831 945 ntTSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 ALG1L5P-201ENST00000482043 771 ntBASIC14.75□□□□□ -0.05
USB1Q9BQ65 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.75□□□□□ -0.05
USB1Q9BQ65 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 PRELID3A-208ENST00000590956 777 ntTSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 AC004835.2-201ENST00000603762 682 ntBASIC14.75□□□□□ -0.05
USB1Q9BQ65 AL078644.1-201ENST00000609881 752 ntBASIC14.75□□□□□ -0.05
USB1Q9BQ65 PCDH19-202ENST00000373034 9756 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
USB1Q9BQ65 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
USB1Q9BQ65 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 WASHC2C-209ENST00000540872 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC14.75□□□□□ -0.05
USB1Q9BQ65 SQLE-201ENST00000265896 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
USB1Q9BQ65 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 MTERF2-201ENST00000240050 1790 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
USB1Q9BQ65 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 PPIL2-212ENST00000626352 2625 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
USB1Q9BQ65 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
USB1Q9BQ65 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
USB1Q9BQ65 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
USB1Q9BQ65 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
USB1Q9BQ65 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 HMOX2-217ENST00000619528 1829 ntAPPRIS P1 TSL 5 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 MEI1-215ENST00000540833 2326 ntTSL 5 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 TTC31-205ENST00000442235 958 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 TSPAN32-207ENST00000451520 1236 ntAPPRIS ALT2 TSL 2 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 AKR1A1-204ENST00000471651 1018 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 CXCL11-202ENST00000503860 767 ntAPPRIS P1 TSL 3 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 AC011124.1-204ENST00000522265 562 ntTSL 4 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 PUS1-205ENST00000535067 838 ntTSL 3 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 AC092902.6-201ENST00000641783 218 ntBASIC14.74□□□□□ -0.05
USB1Q9BQ65 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 GNAQ-201ENST00000286548 6539 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 UBTF-204ENST00000436088 2738 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 PIGT-257ENST00000640210 1715 ntTSL 5 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 F7-201ENST00000346342 2409 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 CNTRL-208ENST00000373865 1917 ntTSL 5 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 AC099508.1-201ENST00000499110 1666 ntTSL 4 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC14.74□□□□□ -0.05
USB1Q9BQ65 LAT-203ENST00000395456 1616 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
USB1Q9BQ65 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 LMNA-205ENST00000368299 2253 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 OSBPL9-222ENST00000531828 2210 ntTSL 5 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 PCDHA2-201ENST00000378132 2626 ntAPPRIS ALT2 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 HS3ST3B1-201ENST00000360954 5367 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 RPS27A-201ENST00000272317 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 RPS8P6-201ENST00000426177 609 ntBASIC14.73□□□□□ -0.05
USB1Q9BQ65 SPDYE2-202ENST00000432940 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 SPDYE2B-201ENST00000436228 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 SPDYE5-201ENST00000455862 1209 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 AP002490.2-201ENST00000524791 560 ntBASIC14.73□□□□□ -0.05
USB1Q9BQ65 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 AC019209.2-201ENST00000545704 373 ntTSL 3 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 CHST3-201ENST00000373115 6970 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 KC6-207ENST00000600644 2311 ntTSL 3 BASIC14.73□□□□□ -0.05
USB1Q9BQ65 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 POLR3D-202ENST00000397802 5494 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 NSMF-204ENST00000371473 3556 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
USB1Q9BQ65 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 32.2 ms