Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 AC005412.3-201ENST00000580309 715 ntBASIC15.77■□□□□ 0.12
VMP1Q96GC9 AC007193.2-201ENST00000596807 472 ntTSL 3 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 LINC01128-210ENST00000609139 455 ntTSL 3 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 ACTL9-202ENST00000612068 1252 ntBASIC15.77■□□□□ 0.12
VMP1Q96GC9 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC15.77■□□□□ 0.12
VMP1Q96GC9 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 PTPRO-202ENST00000348962 5061 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
VMP1Q96GC9 AC063926.3-201ENST00000624734 5658 ntBASIC15.77■□□□□ 0.12
VMP1Q96GC9 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VMP1Q96GC9 STX3-203ENST00000529177 1571 ntTSL 2 BASIC15.77■□□□□ 0.11
VMP1Q96GC9 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VMP1Q96GC9 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VMP1Q96GC9 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC15.77■□□□□ 0.11
VMP1Q96GC9 ZNF687-201ENST00000324048 5378 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VMP1Q96GC9 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
VMP1Q96GC9 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
VMP1Q96GC9 FOS-208ENST00000555686 1496 ntTSL 2 BASIC15.77■□□□□ 0.11
VMP1Q96GC9 PCDHA10-201ENST00000307360 5254 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VMP1Q96GC9 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC15.77■□□□□ 0.11
VMP1Q96GC9 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
VMP1Q96GC9 CD72-211ENST00000612238 1424 ntAPPRIS ALT2 TSL 5 BASIC15.77■□□□□ 0.11
VMP1Q96GC9 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC15.77■□□□□ 0.11
VMP1Q96GC9 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 LTBR-207ENST00000539925 1665 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 URAHP-203ENST00000517889 1381 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 ORMDL3-201ENST00000304046 2111 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 SARDH-202ENST00000371867 1326 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 NBPF9-207ENST00000615421 5835 ntAPPRIS P2 TSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 RAB3IP-202ENST00000362025 2055 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 ZMIZ2-202ENST00000309315 5144 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 YBX2P1-201ENST00000394192 760 ntBASIC15.76■□□□□ 0.11
VMP1Q96GC9 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 SFTPC-204ENST00000520605 519 ntTSL 3 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 KRT19P2-202ENST00000557173 1012 ntBASIC15.76■□□□□ 0.11
VMP1Q96GC9 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 MTDHP5-201ENST00000598980 586 ntBASIC15.76■□□□□ 0.11
VMP1Q96GC9 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 CCDC189-204ENST00000541260 1531 ntTSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 ZSWIM8-221ENST00000604729 6075 ntAPPRIS ALT1 TSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 PAUPAR-201ENST00000630360 2965 ntBASIC15.76■□□□□ 0.11
VMP1Q96GC9 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 ARHGEF4-206ENST00000428230 2172 ntTSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 ZHX1-201ENST00000297857 5200 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
VMP1Q96GC9 EML3-202ENST00000394773 3256 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
VMP1Q96GC9 MBNL1-202ENST00000282488 6458 ntTSL 5 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 NBL1-211ENST00000618761 2051 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 CNOT8-204ENST00000517876 2708 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 RUFY1-202ENST00000393438 2454 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 SH3BP2-207ENST00000503393 9158 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 IMPA1-201ENST00000256108 2690 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 AP1S2-201ENST00000329235 2237 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 SYNDIG1L-202ENST00000554823 2420 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
VMP1Q96GC9 KLHDC8B-201ENST00000332780 1959 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 STAC-201ENST00000273183 3227 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
VMP1Q96GC9 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC15.75■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 25.2 ms