Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC11.56□□□□□ -0.56
PRKDCP78527 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC11.56□□□□□ -0.56
PRKDCP78527 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.56
PRKDCP78527 LINC01352-201ENST00000431347 962 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 HOMER2P2-201ENST00000451621 847 ntBASIC11.56□□□□□ -0.56
PRKDCP78527 TP53AIP1-201ENST00000458238 777 ntAPPRIS ALT2 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 CLEC11A-202ENST00000599973 1026 ntTSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 GPANK1-203ENST00000375896 1910 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC11.56□□□□□ -0.56
PRKDCP78527 MPZL2-202ENST00000438295 1370 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 SPATA20-226ENST00000619622 2769 ntAPPRIS P2 TSL 5 BASIC11.56□□□□□ -0.56
PRKDCP78527 MAFF-207ENST00000538999 2365 ntTSL 2 BASIC11.56□□□□□ -0.56
PRKDCP78527 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC11.56□□□□□ -0.56
PRKDCP78527 AL023775.1-201ENST00000454907 1746 ntBASIC11.56□□□□□ -0.56
PRKDCP78527 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 SYCE2-201ENST00000293695 1231 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
PRKDCP78527 AC093433.1-201ENST00000458048 571 ntBASIC11.55□□□□□ -0.56
PRKDCP78527 PGAM1P5-201ENST00000548011 764 ntBASIC11.55□□□□□ -0.56
PRKDCP78527 IGHV3OR16-8-201ENST00000565407 349 ntAPPRIS P1 BASIC11.55□□□□□ -0.56
PRKDCP78527 AC136428.1-201ENST00000569103 349 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 SMIM22-211ENST00000615889 1047 ntAPPRIS P4 TSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 LINC00969-257ENST00000625632 898 ntTSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 CCDC51-202ENST00000412398 1385 ntTSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 RERG-209ENST00000546331 1383 ntTSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 HDAC10-205ENST00000448072 2133 ntTSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 AL031731.1-201ENST00000642131 2094 ntBASIC11.55□□□□□ -0.56
PRKDCP78527 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 DPCD-202ENST00000370151 858 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 DPM2-202ENST00000373110 738 ntTSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 AZGP1P1-201ENST00000411909 902 ntBASIC11.55□□□□□ -0.56
PRKDCP78527 AC007274.2-201ENST00000421675 662 ntBASIC11.55□□□□□ -0.56
PRKDCP78527 AC022748.3-201ENST00000621828 275 ntBASIC11.55□□□□□ -0.56
PRKDCP78527 AP001043.1-205ENST00000623098 1033 ntTSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 NME9-203ENST00000383180 2133 ntTSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 BNIP2-212ENST00000607373 1851 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 LUC7L2-202ENST00000354926 2645 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 DBNDD2-201ENST00000357275 1036 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 IGLV3-15-201ENST00000518356 244 ntBASIC11.55□□□□□ -0.56
PRKDCP78527 RN7SL48P-201ENST00000579283 293 ntBASIC11.55□□□□□ -0.56
PRKDCP78527 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 BPGM-203ENST00000418040 1870 ntAPPRIS P1 TSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 COQ10B-201ENST00000263960 2239 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC11.55□□□□□ -0.56
PRKDCP78527 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC11.55□□□□□ -0.56
PRKDCP78527 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 CYR61-201ENST00000451137 2290 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 NFE2-202ENST00000435572 1762 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.56
PRKDCP78527 AKIP1-201ENST00000299576 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 S100A2-203ENST00000368709 457 ntAPPRIS P1 TSL 3 BASIC11.54□□□□□ -0.56
PRKDCP78527 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC11.54□□□□□ -0.56
PRKDCP78527 BAATP1-201ENST00000412284 1225 ntBASIC11.54□□□□□ -0.56
PRKDCP78527 Z97180.1-201ENST00000445173 988 ntBASIC11.54□□□□□ -0.56
PRKDCP78527 PGAP2-208ENST00000464229 863 ntTSL 3 BASIC11.54□□□□□ -0.56
PRKDCP78527 AL022344.2-201ENST00000568976 968 ntBASIC11.54□□□□□ -0.56
PRKDCP78527 AC009486.1-201ENST00000569860 813 ntBASIC11.54□□□□□ -0.56
PRKDCP78527 AP001527.2-201ENST00000614441 631 ntBASIC11.54□□□□□ -0.56
PRKDCP78527 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC11.54□□□□□ -0.56
PRKDCP78527 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC11.54□□□□□ -0.56
PRKDCP78527 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 MTMR12-201ENST00000264934 2215 ntTSL 2 BASIC11.54□□□□□ -0.56
PRKDCP78527 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC11.54□□□□□ -0.56
PRKDCP78527 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC11.54□□□□□ -0.56
PRKDCP78527 CD1E-202ENST00000368155 696 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 CD1E-204ENST00000368157 399 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 PKIG-203ENST00000372887 769 ntTSL 3 BASIC11.54□□□□□ -0.56
PRKDCP78527 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 AC097717.1-202ENST00000457577 740 ntTSL 3 BASIC11.54□□□□□ -0.56
PRKDCP78527 IKBKB-212ENST00000519735 1166 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC11.54□□□□□ -0.56
PRKDCP78527 ECHDC2-203ENST00000371522 1509 ntAPPRIS P1 TSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC11.54□□□□□ -0.56
PRKDCP78527 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC11.54□□□□□ -0.56
PRKDCP78527 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC11.54□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms