Protein–RNA interactions for Protein: P61024

CKS1B, Cyclin-dependent kinases regulatory subunit 1, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP61024 KDM5C-208ENST00000452825 6096 ntAPPRIS ALT2 TSL 5 BASIC11.59□□□□□ -0.55
CKS1BP61024 VILL-207ENST00000465644 1857 ntTSL 5 BASIC11.59□□□□□ -0.55
CKS1BP61024 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 TRIM73-205ENST00000450434 1425 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 MARK3-202ENST00000303622 3283 ntAPPRIS P3 TSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 CEP131-203ENST00000450824 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC11.59□□□□□ -0.55
CKS1BP61024 FUT3-202ENST00000458379 2024 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC11.59□□□□□ -0.55
CKS1BP61024 TMEM50B-210ENST00000542230 2375 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 TMEM132C-201ENST00000435159 4947 ntAPPRIS P1 TSL 5 BASIC11.59□□□□□ -0.55
CKS1BP61024 GABPB1-201ENST00000220429 2726 ntTSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC11.59□□□□□ -0.55
CKS1BP61024 HNF1A-201ENST00000257555 3442 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.55
CKS1BP61024 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC11.58□□□□□ -0.55
CKS1BP61024 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 GPR68-203ENST00000531499 2859 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 AC087164.1-202ENST00000583062 2158 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 RPS6KC1-201ENST00000366959 5454 ntAPPRIS ALT1 TSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 RPS6KC1-202ENST00000366960 5490 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 KBTBD12-202ENST00000405109 5727 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 IKZF1-218ENST00000615491 5637 ntTSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 PPM1B-205ENST00000409432 3025 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 PSD-202ENST00000406432 3861 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 PLAUR-201ENST00000221264 1610 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 SLC44A2-201ENST00000335757 3671 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 MGAT1-203ENST00000393340 3077 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 NCOR2-201ENST00000356219 7226 ntTSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 PEX26-203ENST00000428061 815 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC11.58□□□□□ -0.56
CKS1BP61024 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC11.58□□□□□ -0.56
CKS1BP61024 LITAF-220ENST00000620789 692 ntTSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 AL023973.1-201ENST00000624619 620 ntBASIC11.58□□□□□ -0.56
CKS1BP61024 SELENON-202ENST00000361547 4334 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 PADI2-202ENST00000375486 4345 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 KCNMA1-262ENST00000639489 4302 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 GOPC-201ENST00000052569 4590 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 AC073347.1-201ENST00000421633 2643 ntBASIC11.58□□□□□ -0.56
CKS1BP61024 SLC25A35-201ENST00000380067 2785 ntTSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 COL6A4P2-202ENST00000504443 2753 ntBASIC11.58□□□□□ -0.56
CKS1BP61024 MROH2A-201ENST00000389758 5355 ntAPPRIS ALT2 TSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 ZSCAN25-201ENST00000262941 1652 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC11.58□□□□□ -0.56
CKS1BP61024 GBGT1-204ENST00000372043 1935 ntTSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 ATE1-202ENST00000369040 4803 ntTSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 IGF2-207ENST00000434045 1583 ntTSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 YIPF2-204ENST00000586748 1550 ntAPPRIS P1 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 SENP3-202ENST00000429205 2222 ntAPPRIS P1 TSL 5 BASIC11.58□□□□□ -0.56
CKS1BP61024 ZNF365-207ENST00000410046 3379 ntTSL 2 BASIC11.58□□□□□ -0.56
CKS1BP61024 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC11.58□□□□□ -0.56
CKS1BP61024 INF2-203ENST00000392634 4672 ntAPPRIS P3 TSL 5 BASIC11.57□□□□□ -0.56
CKS1BP61024 SYDE1-201ENST00000342784 3264 ntAPPRIS P1 TSL 2 BASIC11.57□□□□□ -0.56
CKS1BP61024 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 IL17RD-201ENST00000296318 8720 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC11.57□□□□□ -0.56
CKS1BP61024 SLC35C2-203ENST00000372227 2505 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 APOPT1-201ENST00000409074 2523 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC11.57□□□□□ -0.56
CKS1BP61024 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 ZFP90-209ENST00000570495 4636 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 BLOC1S5-202ENST00000397457 2684 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC11.57□□□□□ -0.56
CKS1BP61024 FASN-206ENST00000634990 8407 ntAPPRIS ALT1 TSL 5 BASIC11.57□□□□□ -0.56
CKS1BP61024 AC004922.1-201ENST00000638617 2430 ntAPPRIS P1 TSL 5 BASIC11.57□□□□□ -0.56
CKS1BP61024 LEXM-201ENST00000358193 1777 ntAPPRIS P3 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC11.57□□□□□ -0.56
CKS1BP61024 PTPRU-205ENST00000460170 5337 ntTSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 KCNV2-201ENST00000382082 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 DTX3L-201ENST00000296161 5868 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
CKS1BP61024 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC11.57□□□□□ -0.56
Retrieved 100 of 98,524 protein–RNA pairs in 30.9 ms