Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIMK1P53667 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIMK1P53667 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.15■□□□□ 0.18
LIMK1P53667 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIMK1P53667 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIMK1P53667 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIMK1P53667 REXO1L11P-201ENST00000620964 1927 ntBASIC16.15■□□□□ 0.18
LIMK1P53667 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
LIMK1P53667 ATP6AP2-225ENST00000637482 1648 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
LIMK1P53667 LINC01097-201ENST00000627163 2122 ntTSL 2 BASIC16.15■□□□□ 0.18
LIMK1P53667 ECE2-201ENST00000324557 1823 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
LIMK1P53667 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.18
LIMK1P53667 NFYC-210ENST00000425457 1536 ntTSL 2 BASIC16.14■□□□□ 0.18
LIMK1P53667 FBLIM1-206ENST00000441801 1543 ntTSL 1 (best) BASIC16.14■□□□□ 0.18
LIMK1P53667 UBN1-201ENST00000262376 6252 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.14■□□□□ 0.17
LIMK1P53667 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 NPM2-203ENST00000397940 1874 ntAPPRIS P2 TSL 2 BASIC16.14■□□□□ 0.17
LIMK1P53667 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 APOA5-203ENST00000542499 1929 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LIMK1P53667 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 CATSPERZ-201ENST00000328404 743 ntAPPRIS P5 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 NTMT1-201ENST00000372480 852 ntAPPRIS P1 TSL 3 BASIC16.14■□□□□ 0.17
LIMK1P53667 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC16.14■□□□□ 0.17
LIMK1P53667 IGHV3-35-201ENST00000390617 366 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
LIMK1P53667 AC092506.1-202ENST00000401022 528 ntBASIC16.14■□□□□ 0.17
LIMK1P53667 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 TMEM14DP-201ENST00000422205 345 ntBASIC16.14■□□□□ 0.17
LIMK1P53667 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.14■□□□□ 0.17
LIMK1P53667 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
LIMK1P53667 ELK1P1-201ENST00000485699 580 ntBASIC16.14■□□□□ 0.17
LIMK1P53667 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.14■□□□□ 0.17
LIMK1P53667 AC103810.3-201ENST00000583567 96 ntBASIC16.14■□□□□ 0.17
LIMK1P53667 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC16.14■□□□□ 0.17
LIMK1P53667 RETN-203ENST00000629642 400 ntTSL 5 BASIC16.14■□□□□ 0.17
LIMK1P53667 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC16.14■□□□□ 0.17
LIMK1P53667 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC16.14■□□□□ 0.17
LIMK1P53667 MEG3-205ENST00000412736 1615 ntTSL 2 BASIC16.14■□□□□ 0.17
LIMK1P53667 LINC00895-201ENST00000629028 1637 ntBASIC16.14■□□□□ 0.17
LIMK1P53667 FAM153A-203ENST00000440605 1966 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 DLK1-202ENST00000341267 4722 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LIMK1P53667 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 SHTN1-203ENST00000392901 2190 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
LIMK1P53667 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 JADE2-201ENST00000282605 2748 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
LIMK1P53667 GPAT3-208ENST00000611707 2633 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
LIMK1P53667 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC16.14■□□□□ 0.17
LIMK1P53667 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.14■□□□□ 0.17
LIMK1P53667 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
LIMK1P53667 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 LRP8-207ENST00000465675 2670 ntTSL 2 BASIC16.13■□□□□ 0.17
LIMK1P53667 ADGRA3-202ENST00000334304 4566 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 LBX1-201ENST00000370193 2900 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 BEST2-202ENST00000549706 2183 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LIMK1P53667 TP53BP2-201ENST00000343537 4651 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 AGER-204ENST00000375067 1250 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC16.13■□□□□ 0.17
LIMK1P53667 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LIMK1P53667 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC16.13■□□□□ 0.17
LIMK1P53667 SERBP1P3-201ENST00000459980 809 ntBASIC16.13■□□□□ 0.17
LIMK1P53667 IP6K1-203ENST00000460540 1260 ntTSL 2 BASIC16.13■□□□□ 0.17
LIMK1P53667 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 RN7SL219P-201ENST00000582872 296 ntBASIC16.13■□□□□ 0.17
LIMK1P53667 FLT3LG-205ENST00000596435 1034 ntTSL 5 BASIC16.13■□□□□ 0.17
LIMK1P53667 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.13■□□□□ 0.17
LIMK1P53667 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC16.13■□□□□ 0.17
LIMK1P53667 SRD5A3P1-201ENST00000603021 949 ntBASIC16.13■□□□□ 0.17
LIMK1P53667 TEX48-202ENST00000612244 662 ntTSL 3 BASIC16.13■□□□□ 0.17
LIMK1P53667 GPR182-203ENST00000622922 591 ntBASIC16.13■□□□□ 0.17
LIMK1P53667 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC16.13■□□□□ 0.17
LIMK1P53667 IRF5-215ENST00000619830 1652 ntTSL 2 BASIC16.13■□□□□ 0.17
LIMK1P53667 CD300A-202ENST00000360141 1858 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
LIMK1P53667 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.13■□□□□ 0.17
LIMK1P53667 AC131009.4-201ENST00000624048 1740 ntBASIC16.13■□□□□ 0.17
LIMK1P53667 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC16.13■□□□□ 0.17
LIMK1P53667 TOM1-210ENST00000449058 2389 ntAPPRIS P3 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC16.13■□□□□ 0.17
LIMK1P53667 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
LIMK1P53667 C2orf50-201ENST00000381585 2684 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIMK1P53667 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIMK1P53667 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIMK1P53667 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIMK1P53667 CXXC1-201ENST00000285106 2936 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
LIMK1P53667 CCDC28B-202ENST00000421922 1415 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LIMK1P53667 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
LIMK1P53667 PPP4R3A-208ENST00000555462 3236 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
LIMK1P53667 CDC25A-202ENST00000351231 3663 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 71 ms