Protein–RNA interactions for Protein: P48742

LHX1, LIM/homeobox protein Lhx1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX1P48742 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 PUDP-203ENST00000424830 1334 ntTSL 3 BASIC17.29■□□□□ 0.36
LHX1P48742 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
LHX1P48742 CBX2-201ENST00000269399 1061 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LHX1P48742 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC17.29■□□□□ 0.36
LHX1P48742 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 AL139010.1-201ENST00000454878 894 ntBASIC17.29■□□□□ 0.36
LHX1P48742 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC17.29■□□□□ 0.36
LHX1P48742 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC17.29■□□□□ 0.36
LHX1P48742 SPCS2P1-201ENST00000561636 679 ntBASIC17.29■□□□□ 0.36
LHX1P48742 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC17.29■□□□□ 0.36
LHX1P48742 PAM16-215ENST00000577031 548 ntTSL 4 BASIC17.29■□□□□ 0.36
LHX1P48742 AL096865.1-201ENST00000606796 927 ntBASIC17.29■□□□□ 0.36
LHX1P48742 AL589739.1-201ENST00000607720 493 ntBASIC17.29■□□□□ 0.36
LHX1P48742 AL133215.2-201ENST00000609242 977 ntBASIC17.29■□□□□ 0.36
LHX1P48742 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
LHX1P48742 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
LHX1P48742 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 AC005052.1-201ENST00000625181 2492 ntBASIC17.29■□□□□ 0.36
LHX1P48742 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC17.29■□□□□ 0.36
LHX1P48742 CBX6-202ENST00000407418 6122 ntAPPRIS P3 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 REXO1L8P-201ENST00000604378 1897 ntBASIC17.29■□□□□ 0.36
LHX1P48742 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC17.29■□□□□ 0.36
LHX1P48742 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC17.29■□□□□ 0.36
LHX1P48742 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX1P48742 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC17.28■□□□□ 0.36
LHX1P48742 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.28■□□□□ 0.36
LHX1P48742 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 SLC9A1-203ENST00000374086 2183 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.28■□□□□ 0.36
LHX1P48742 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LHX1P48742 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LHX1P48742 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 RBM39-205ENST00000397370 612 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX1P48742 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC17.28■□□□□ 0.36
LHX1P48742 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
LHX1P48742 LY6E-204ENST00000519546 971 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX1P48742 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC17.28■□□□□ 0.36
LHX1P48742 AL138828.2-201ENST00000615812 383 ntBASIC17.28■□□□□ 0.36
LHX1P48742 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.28■□□□□ 0.36
LHX1P48742 SPDYE12P-201ENST00000618416 771 ntBASIC17.28■□□□□ 0.36
LHX1P48742 AL390754.1-201ENST00000619088 582 ntBASIC17.28■□□□□ 0.36
LHX1P48742 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC17.28■□□□□ 0.36
LHX1P48742 TPM1-201ENST00000267996 1670 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 RGS20-201ENST00000276500 1664 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC17.28■□□□□ 0.36
LHX1P48742 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
LHX1P48742 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC17.28■□□□□ 0.36
LHX1P48742 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX1P48742 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
LHX1P48742 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC17.28■□□□□ 0.36
LHX1P48742 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LHX1P48742 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 AUNIP-201ENST00000374298 2116 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 ARPC1B-211ENST00000451682 1715 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
LHX1P48742 ARNT-212ENST00000515192 2892 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
LHX1P48742 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
LHX1P48742 FOXO3-202ENST00000406360 7341 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC17.27■□□□□ 0.36
LHX1P48742 QRFP-202ENST00000623824 1658 ntAPPRIS P1 TSL 3 BASIC17.27■□□□□ 0.36
LHX1P48742 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC17.27■□□□□ 0.36
LHX1P48742 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
LHX1P48742 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
LHX1P48742 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.27■□□□□ 0.36
LHX1P48742 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
LHX1P48742 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
LHX1P48742 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC17.27■□□□□ 0.36
LHX1P48742 AC241585.1-201ENST00000433527 519 ntBASIC17.27■□□□□ 0.36
LHX1P48742 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC17.27■□□□□ 0.36
LHX1P48742 AC245100.5-201ENST00000452108 331 ntBASIC17.27■□□□□ 0.36
LHX1P48742 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC17.27■□□□□ 0.36
LHX1P48742 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms