Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PCDHGA1Q9Y5H4 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC15.71■□□□□ 0.1
PCDHGA1Q9Y5H4 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.1
PCDHGA1Q9Y5H4 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 TP73-AS1-203ENST00000423764 2875 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 TRIM50-201ENST00000333149 2047 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 TMPRSS5-207ENST00000540540 2001 ntTSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 RAB11FIP5-205ENST00000486777 6120 ntTSL 5 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 BEX3-203ENST00000372635 805 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 LINC00116-202ENST00000426713 461 ntAPPRIS ALT2 TSL 3 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 LINC01784-201ENST00000438401 378 ntTSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AC093724.1-201ENST00000448659 1027 ntBASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 PMF1-BGLAP-203ENST00000490491 1007 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AC023310.3-201ENST00000557027 670 ntBASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AC100756.1-201ENST00000562736 682 ntBASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AC138749.3-201ENST00000567691 622 ntBASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AC061975.2-201ENST00000581722 295 ntBASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AC015936.2-201ENST00000593177 259 ntBASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 TMEM261P1-201ENST00000604899 340 ntBASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 AC116165.1-201ENST00000611806 668 ntBASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 COX11-210ENST00000639671 696 ntBASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 HECTD2-204ENST00000446394 4939 ntTSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 TEX264-204ENST00000415259 2290 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 NOMO1-208ENST00000620755 3921 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 PARP12-201ENST00000263549 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC15.7■□□□□ 0.1
PCDHGA1Q9Y5H4 RPS28-203ENST00000600659 1326 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 LINC02012-201ENST00000608206 1725 ntBASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 LCE5A-201ENST00000334269 819 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 CTRB1-201ENST00000361017 858 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 HIST1H2BPS3-201ENST00000419683 341 ntBASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 AC017116.1-201ENST00000445938 708 ntTSL 3 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 NOP2-211ENST00000540228 668 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 ORC6-206ENST00000568364 888 ntTSL 5 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 AC092337.1-201ENST00000568699 1129 ntBASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 CTBP2P3-201ENST00000585629 1255 ntBASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 RAMP2-202ENST00000587142 549 ntAPPRIS ALT1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 RAMP2-203ENST00000588576 573 ntTSL 5 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 AC020765.3-201ENST00000613051 740 ntBASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 AC133552.6-201ENST00000613406 534 ntBASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 AL139011.1-202ENST00000642063 584 ntBASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 AL671710.1-201ENST00000610245 2349 ntBASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 ZNF500-202ENST00000545009 2440 ntTSL 2 BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
PCDHGA1Q9Y5H4 ESYT2-206ENST00000613624 2766 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms