Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 MAX-210ENST00000555419 765 ntTSL 5 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 C17orf62-239ENST00000585080 741 ntAPPRIS P1 TSL 5 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 RETN-203ENST00000629642 400 ntTSL 5 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 AC090164.4-201ENST00000632451 313 ntTSL 5 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 BX276092.9-201ENST00000636797 1563 ntAPPRIS ALT2 TSL 5 BASIC30.87■■■□□ 2.53
SHROOM4Q9ULL8 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 SSR4-201ENST00000320857 1671 ntAPPRIS P1 TSL 2 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 RPS24-203ENST00000435275 656 ntAPPRIS ALT1 TSL 2 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 RPS24-214ENST00000613865 538 ntTSL 5 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 SFTA2-203ENST00000634371 815 ntTSL 5 BASIC30.86■■■□□ 2.53
SHROOM4Q9ULL8 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 ARHGEF19-201ENST00000270747 3029 ntAPPRIS P1 TSL 1 (best) BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 AC103810.3-201ENST00000583567 96 ntBASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC30.85■■■□□ 2.53
SHROOM4Q9ULL8 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 KRT8P12-202ENST00000472924 1397 ntBASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 UPF1-201ENST00000262803 5348 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 VAPA-201ENST00000340541 1227 ntTSL 5 BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 SPDYE17-201ENST00000412399 783 ntBASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 AL139011.1-202ENST00000642063 584 ntBASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 CDK8-201ENST00000381527 3055 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC30.84■■■□□ 2.53
SHROOM4Q9ULL8 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 VMO1-203ENST00000416307 712 ntTSL 2 BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 TPI1-206ENST00000488464 791 ntTSL 5 BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 AC123786.1-201ENST00000581626 661 ntTSL 3 BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 OLA1-202ENST00000344357 1656 ntTSL 2 BASIC30.83■■■□□ 2.53
SHROOM4Q9ULL8 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 AC114730.3-201ENST00000435195 584 ntTSL 5 BASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 TMEM191A-209ENST00000452055 788 ntTSL 2 BASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 AL513217.1-202ENST00000458139 600 ntTSL 3 BASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 AC233724.13-201ENST00000598383 410 ntBASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 GPR182-203ENST00000622922 591 ntBASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 RELA-227ENST00000615805 2236 ntTSL 5 BASIC30.82■■■□□ 2.53
SHROOM4Q9ULL8 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 ARMC6-203ENST00000392336 1866 ntTSL 2 BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 MOB3A-201ENST00000357066 3391 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 VASN-201ENST00000304735 2806 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 AC010319.3-201ENST00000597028 470 ntBASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC30.82■■■□□ 2.52
SHROOM4Q9ULL8 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC30.82■■■□□ 2.52
Retrieved 100 of 98,524 protein–RNA pairs in 64.5 ms