Protein–RNA interactions for Protein: Q9NRR5

UBQLN4, Ubiquilin-4, humanhuman

Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UBQLN4Q9NRR5 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 MIB1-201ENST00000261537 9576 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 AC136759.1-201ENST00000534201 2163 ntTSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 TFAMP1-201ENST00000412727 736 ntBASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 COX10-202ENST00000429152 875 ntTSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 RN7SL589P-201ENST00000481268 310 ntBASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 PRYP6-201ENST00000514804 343 ntBASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 ARHGDIA-208ENST00000581876 709 ntTSL 3 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 AL592424.1-201ENST00000563624 1536 ntBASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 BSG-215ENST00000618006 1329 ntTSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 SGSH-201ENST00000326317 2784 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 ALDH2-202ENST00000416293 1572 ntTSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 THOC5-202ENST00000397871 2560 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 DLG4-201ENST00000302955 3184 ntAPPRIS P3 TSL 5 BASIC15.1■□□□□ 0.01
UBQLN4Q9NRR5 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TPM1-219ENST00000559397 1655 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TUBB8-201ENST00000561967 1413 ntTSL 5 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 DOC2GP-204ENST00000639052 2548 ntBASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 CELF6-201ENST00000287202 3345 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 CDH6-205ENST00000514738 2569 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TMEM147-201ENST00000222284 899 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 SMN1-201ENST00000351205 900 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 SMN2-201ENST00000380741 900 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 HTR5BP-201ENST00000430851 1154 ntBASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 AL135744.1-201ENST00000565098 629 ntBASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 AC005829.1-201ENST00000570002 483 ntBASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 AC011476.2-201ENST00000585492 1271 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 SMN2-216ENST00000638794 846 ntAPPRIS ALT2 TSL 5 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 ABHD15-201ENST00000307201 3592 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 IFRD1-202ENST00000403825 2290 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 PPP1R26-205ENST00000605286 4744 ntAPPRIS P1 TSL 3 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 FER1L4-210ENST00000615531 5998 ntBASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 TMEM120A-201ENST00000417509 1444 ntTSL 2 BASIC15.09■□□□□ 0.01
UBQLN4Q9NRR5 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC15.08■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 43.5 ms