Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 DPM2-202ENST00000373110 738 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 AC243562.1-201ENST00000560672 389 ntBASIC19.81■□□□□ 0.76
VPS53Q5VIR6 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 AL135744.1-201ENST00000565098 629 ntBASIC19.81■□□□□ 0.76
VPS53Q5VIR6 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 WASF1-206ENST00000392588 3122 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 GLOD4-203ENST00000536578 2497 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 CHRNB2-201ENST00000368476 5867 ntAPPRIS P2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 MARVELD3-204ENST00000565261 1351 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 FGFR2-207ENST00000359354 1680 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 NARF-206ENST00000457415 1668 ntTSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.81■□□□□ 0.76
VPS53Q5VIR6 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 SETD7-204ENST00000506866 1602 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 RALYL-208ENST00000522455 2168 ntAPPRIS ALT2 TSL 2 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 VPS37C-201ENST00000301765 2865 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 CRYBA2-201ENST00000295728 893 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 RPLP2-201ENST00000321153 781 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 C9orf116-202ENST00000371789 1278 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 TFAMP1-201ENST00000412727 736 ntBASIC19.8■□□□□ 0.76
VPS53Q5VIR6 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 PXN-AS1-202ENST00000538804 508 ntTSL 4 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 AL161645.1-201ENST00000622716 1255 ntBASIC19.8■□□□□ 0.76
VPS53Q5VIR6 AC134684.3-201ENST00000641758 218 ntBASIC19.8■□□□□ 0.76
VPS53Q5VIR6 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 WNT10B-203ENST00000407467 1802 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 TMTC2-201ENST00000321196 5681 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 SYTL2-215ENST00000527523 3049 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
VPS53Q5VIR6 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 PCGF3-213ENST00000620529 1899 ntBASIC19.79■□□□□ 0.76
VPS53Q5VIR6 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 DVL1-202ENST00000378891 2926 ntAPPRIS P3 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 TPD52L2-209ENST00000611972 2197 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 MIR1233-2-201ENST00000408138 82 ntBASIC19.79■□□□□ 0.76
VPS53Q5VIR6 MIR1233-1-201ENST00000408722 82 ntBASIC19.79■□□□□ 0.76
VPS53Q5VIR6 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 AC010503.2-201ENST00000599292 296 ntTSL 3 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC19.79■□□□□ 0.76
VPS53Q5VIR6 AC105339.1-204ENST00000636249 355 ntBASIC19.79■□□□□ 0.76
VPS53Q5VIR6 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC19.79■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms