Protein–RNA interactions for Protein: Q07654

TFF3, Trefoil factor 3, humanhuman

Predictions only

Length 80 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TFF3Q07654 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 DFFBP1-201ENST00000433250 979 ntBASIC14.4□□□□□ -0.1
TFF3Q07654 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC14.4□□□□□ -0.1
TFF3Q07654 GNAQP1-201ENST00000444815 1067 ntBASIC14.4□□□□□ -0.1
TFF3Q07654 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 GPR53P-205ENST00000457298 1084 ntBASIC14.4□□□□□ -0.1
TFF3Q07654 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 AC002985.2-201ENST00000601106 957 ntTSL 4 BASIC14.4□□□□□ -0.1
TFF3Q07654 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 IGHV3-72-202ENST00000621503 303 ntBASIC14.4□□□□□ -0.1
TFF3Q07654 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 PODXL-201ENST00000322985 2011 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC14.4□□□□□ -0.1
TFF3Q07654 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC14.4□□□□□ -0.1
TFF3Q07654 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
TFF3Q07654 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC14.4□□□□□ -0.1
TFF3Q07654 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
TFF3Q07654 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TFF3Q07654 HNRNPUL2-BSCL2-201ENST00000403734 4001 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
TFF3Q07654 ALDH3B1-208ENST00000617288 2078 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
TFF3Q07654 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
TFF3Q07654 AL671710.1-201ENST00000610245 2349 ntBASIC14.4□□□□□ -0.11
TFF3Q07654 ITSN2-201ENST00000355123 6300 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC14.39□□□□□ -0.11
TFF3Q07654 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC14.39□□□□□ -0.11
TFF3Q07654 ZFP64-205ENST00000371518 1841 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
TFF3Q07654 RNF7-201ENST00000273480 2763 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 BHLHE41-201ENST00000242728 3837 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC14.39□□□□□ -0.11
TFF3Q07654 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 DGCR5-201ENST00000399539 862 ntBASIC14.39□□□□□ -0.11
TFF3Q07654 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC14.39□□□□□ -0.11
TFF3Q07654 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 GIMAP3P-201ENST00000495150 836 ntBASIC14.39□□□□□ -0.11
TFF3Q07654 RNA5SP410-201ENST00000516285 106 ntBASIC14.39□□□□□ -0.11
TFF3Q07654 MRNIP-212ENST00000520698 902 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TFF3Q07654 IGHV3-71-201ENST00000523324 359 ntBASIC14.39□□□□□ -0.11
TFF3Q07654 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC14.39□□□□□ -0.11
TFF3Q07654 CSF1R-209ENST00000543093 921 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 AC104794.3-201ENST00000566840 1248 ntBASIC14.39□□□□□ -0.11
TFF3Q07654 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC14.39□□□□□ -0.11
TFF3Q07654 SLC25A39-207ENST00000586016 1156 ntTSL 5 BASIC14.39□□□□□ -0.11
TFF3Q07654 AC013467.2-201ENST00000605472 835 ntBASIC14.39□□□□□ -0.11
TFF3Q07654 AC004790.1-201ENST00000612686 536 ntBASIC14.39□□□□□ -0.11
TFF3Q07654 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
TFF3Q07654 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
TFF3Q07654 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 DPEP3-201ENST00000268793 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC14.39□□□□□ -0.11
TFF3Q07654 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 IL12RB1-201ENST00000322153 1902 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
TFF3Q07654 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC14.39□□□□□ -0.11
TFF3Q07654 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.39□□□□□ -0.11
TFF3Q07654 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.39□□□□□ -0.11
TFF3Q07654 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC14.39□□□□□ -0.11
TFF3Q07654 ACSL4-201ENST00000340800 5333 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
TFF3Q07654 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 EVPLL-201ENST00000399134 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 NTRK2-207ENST00000376214 5608 ntAPPRIS P3 TSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 ZNF454-201ENST00000320129 2332 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 VASH1-203ENST00000554237 1462 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 OSGIN1-202ENST00000361711 2230 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 SMOX-205ENST00000379460 2230 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 RUNX1-203ENST00000358356 2720 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 PRMT2-208ENST00000451211 1878 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 AL391825.1-201ENST00000457671 1364 ntBASIC14.38□□□□□ -0.11
TFF3Q07654 AC006277.1-201ENST00000624348 1610 ntBASIC14.38□□□□□ -0.11
TFF3Q07654 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
TFF3Q07654 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC14.38□□□□□ -0.11
TFF3Q07654 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
TFF3Q07654 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC14.38□□□□□ -0.11
TFF3Q07654 C11orf88-202ENST00000375618 712 ntAPPRIS ALT2 TSL 1 (best) BASIC14.38□□□□□ -0.11
TFF3Q07654 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms