Protein–RNA interactions for Protein: P52948

NUP98, Nuclear pore complex protein Nup98-Nup96, humanhuman

Predictions only

Length 1,817 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP98P52948 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
NUP98P52948 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC20.1■□□□□ 0.81
NUP98P52948 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
NUP98P52948 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC20.1■□□□□ 0.81
NUP98P52948 RERG-209ENST00000546331 1383 ntTSL 2 BASIC20.1■□□□□ 0.81
NUP98P52948 SEMA3B-204ENST00000433753 2755 ntAPPRIS ALT1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC20.1■□□□□ 0.81
NUP98P52948 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC20.1■□□□□ 0.81
NUP98P52948 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 LINC01663-201ENST00000614596 535 ntTSL 5 BASIC20.1■□□□□ 0.81
NUP98P52948 AL033527.5-201ENST00000641382 801 ntBASIC20.1■□□□□ 0.81
NUP98P52948 PRMT2-203ENST00000355680 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC20.1■□□□□ 0.81
NUP98P52948 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 SELENOF-201ENST00000331835 1781 ntAPPRIS P2 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 ATP4B-201ENST00000335288 1488 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 NRSN1-203ENST00000378478 2408 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC20.1■□□□□ 0.81
NUP98P52948 U73166.1-201ENST00000439898 2625 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC20.1■□□□□ 0.81
NUP98P52948 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC20.1■□□□□ 0.81
NUP98P52948 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
NUP98P52948 NRXN1-202ENST00000342183 3315 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 SLC7A2-205ENST00000522656 2274 ntAPPRIS ALT1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 IDH3B-201ENST00000380843 1545 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC20.09■□□□□ 0.81
NUP98P52948 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC20.09■□□□□ 0.81
NUP98P52948 EIF1AX-201ENST00000379593 765 ntTSL 3 BASIC20.09■□□□□ 0.81
NUP98P52948 MPV17-208ENST00000405076 603 ntTSL 5 BASIC20.09■□□□□ 0.81
NUP98P52948 TEX26-AS1-201ENST00000411835 1203 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 RPL13P2-201ENST00000440687 659 ntBASIC20.09■□□□□ 0.81
NUP98P52948 AC106886.2-201ENST00000483578 883 ntTSL 5 BASIC20.09■□□□□ 0.81
NUP98P52948 AC092552.1-201ENST00000547243 906 ntBASIC20.09■□□□□ 0.81
NUP98P52948 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC20.09■□□□□ 0.81
NUP98P52948 GNRHR2-203ENST00000581100 1187 ntBASIC20.09■□□□□ 0.81
NUP98P52948 AL512343.1-201ENST00000605837 169 ntBASIC20.09■□□□□ 0.81
NUP98P52948 GPS1-202ENST00000320548 1949 ntTSL 2 BASIC20.09■□□□□ 0.81
NUP98P52948 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC20.09■□□□□ 0.81
NUP98P52948 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
NUP98P52948 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.09■□□□□ 0.81
NUP98P52948 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC20.09■□□□□ 0.81
NUP98P52948 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 EIF3L-202ENST00000406934 2282 ntTSL 2 BASIC20.09■□□□□ 0.81
NUP98P52948 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC20.09■□□□□ 0.81
NUP98P52948 PKIG-203ENST00000372887 769 ntTSL 3 BASIC20.09■□□□□ 0.81
NUP98P52948 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC20.09■□□□□ 0.81
NUP98P52948 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC20.09■□□□□ 0.81
NUP98P52948 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC20.08■□□□□ 0.81
NUP98P52948 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NUP98P52948 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC20.08■□□□□ 0.81
NUP98P52948 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NUP98P52948 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
NUP98P52948 RABEP2-202ENST00000358201 2821 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
NUP98P52948 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.81
NUP98P52948 INTS4P2-202ENST00000614726 2019 ntBASIC20.08■□□□□ 0.81
NUP98P52948 ZBTB32-201ENST00000262630 1960 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NUP98P52948 AMT-233ENST00000636522 1620 ntTSL 2 BASIC20.08■□□□□ 0.8
NUP98P52948 USP40-206ENST00000443711 628 ntTSL 2 BASIC20.08■□□□□ 0.8
NUP98P52948 C8orf37-AS1-202ENST00000517655 562 ntTSL 4 BASIC20.08■□□□□ 0.8
NUP98P52948 OMP-201ENST00000529803 492 ntAPPRIS P1 BASIC20.08■□□□□ 0.8
NUP98P52948 TUBB6-203ENST00000586653 788 ntTSL 2 BASIC20.08■□□□□ 0.8
NUP98P52948 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.08■□□□□ 0.8
NUP98P52948 SNAI3-AS1-202ENST00000563475 2081 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NUP98P52948 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
NUP98P52948 SLC47A1-209ENST00000575023 2224 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NUP98P52948 HNRNPA1P48-201ENST00000562726 1377 ntBASIC20.08■□□□□ 0.8
NUP98P52948 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.08■□□□□ 0.8
NUP98P52948 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC20.08■□□□□ 0.8
NUP98P52948 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC20.08■□□□□ 0.8
NUP98P52948 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC20.07■□□□□ 0.8
NUP98P52948 AC080080.1-201ENST00000625121 2420 ntBASIC20.07■□□□□ 0.8
NUP98P52948 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NUP98P52948 NUP62-211ENST00000597029 2053 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NUP98P52948 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NUP98P52948 SLC35F3-201ENST00000366617 2762 ntAPPRIS ALT1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NUP98P52948 MFSD2A-201ENST00000372809 2173 ntTSL 2 BASIC20.07■□□□□ 0.8
NUP98P52948 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC20.07■□□□□ 0.8
NUP98P52948 ATP5D-202ENST00000395633 704 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NUP98P52948 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC20.07■□□□□ 0.8
NUP98P52948 CROCCP4-201ENST00000457096 498 ntBASIC20.07■□□□□ 0.8
NUP98P52948 LINC00847-201ENST00000501855 1871 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
NUP98P52948 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC20.07■□□□□ 0.8
NUP98P52948 COX11-210ENST00000639671 696 ntBASIC20.07■□□□□ 0.8
NUP98P52948 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NUP98P52948 ALOX12P2-203ENST00000570921 1945 ntBASIC20.07■□□□□ 0.8
NUP98P52948 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
NUP98P52948 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
NUP98P52948 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 30.8 ms