Protein–RNA interactions for Protein: Q9NP77

SSU72, RNA polymerase II subunit A C-terminal domain phosphatase SSU72, humanhuman

Known RBP Predictions only

Length 194 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSU72Q9NP77 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 TMEM143-203ENST00000435956 2272 ntTSL 2 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 TRIM73-203ENST00000437796 1169 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 FAM86EP-206ENST00000510506 987 ntBASIC16.32■□□□□ 0.2
SSU72Q9NP77 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 TMEM132D-AS2-201ENST00000542578 1568 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 L2HGDH-206ENST00000555610 804 ntTSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 AL160237.2-201ENST00000556165 472 ntBASIC16.32■□□□□ 0.2
SSU72Q9NP77 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 AC087481.3-201ENST00000602886 1894 ntBASIC16.32■□□□□ 0.2
SSU72Q9NP77 WT1-AS_2.1-201ENST00000613208 137 ntBASIC16.32■□□□□ 0.2
SSU72Q9NP77 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 PLA2G2D-202ENST00000617227 1856 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 STAT6-225ENST00000640254 2037 ntTSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 AFAP1L2-202ENST00000369271 3964 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 RBFOX3-211ENST00000583458 2934 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC16.32■□□□□ 0.2
SSU72Q9NP77 GOLGA2P7-202ENST00000400817 2850 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 ANKMY2-201ENST00000306999 2555 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SSU72Q9NP77 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 GOLGA8DP-202ENST00000341390 2184 ntBASIC16.31■□□□□ 0.2
SSU72Q9NP77 ANKRD33-201ENST00000301190 1935 ntTSL 2 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 AC011477.6-201ENST00000604980 1927 ntBASIC16.31■□□□□ 0.2
SSU72Q9NP77 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 DDX19B-207ENST00000563206 1765 ntTSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 GRAMD4-203ENST00000408031 2834 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 AC129492.6-201ENST00000611383 1305 ntBASIC16.31■□□□□ 0.2
SSU72Q9NP77 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 VMO1-203ENST00000416307 712 ntTSL 2 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 RBM17P3-201ENST00000417687 1192 ntBASIC16.31■□□□□ 0.2
SSU72Q9NP77 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 AC021739.5-201ENST00000558637 494 ntTSL 3 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 AC126696.3-202ENST00000570159 553 ntTSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 KLK6-204ENST00000594641 842 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 DNASE1L2-206ENST00000613572 1260 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 UBAC2-202ENST00000376440 2525 ntTSL 2 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 CASK-202ENST00000378158 3848 ntTSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 SRCIN1-215ENST00000621492 4644 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SSU72Q9NP77 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SSU72Q9NP77 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 TRPC4AP-201ENST00000252015 3226 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 PIGW-204ENST00000614443 2312 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 TOM1L2-201ENST00000318094 2259 ntTSL 2 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 PPP2R5D-202ENST00000394110 2894 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 KHDRBS1-202ENST00000327300 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SSU72Q9NP77 ATP6V0A1-204ENST00000537728 2774 ntTSL 2 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 AC005329.3-201ENST00000626781 1366 ntTSL 5 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.3■□□□□ 0.2
SSU72Q9NP77 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC16.3■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 68.8 ms