Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC16.87■□□□□ 0.29
CDX2Q99626 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC16.87■□□□□ 0.29
CDX2Q99626 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC16.87■□□□□ 0.29
CDX2Q99626 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC16.87■□□□□ 0.29
CDX2Q99626 AP000346.4-201ENST00000614827 381 ntBASIC16.87■□□□□ 0.29
CDX2Q99626 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.87■□□□□ 0.29
CDX2Q99626 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC16.87■□□□□ 0.29
CDX2Q99626 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 PRRT4-205ENST00000489835 2313 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC16.87■□□□□ 0.29
CDX2Q99626 SYT12-203ENST00000525457 1678 ntAPPRIS P1 TSL 2 BASIC16.87■□□□□ 0.29
CDX2Q99626 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.87■□□□□ 0.29
CDX2Q99626 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 E4F1-204ENST00000564139 2493 ntTSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC16.87■□□□□ 0.29
CDX2Q99626 LSP1-203ENST00000405957 1785 ntAPPRIS ALT2 TSL 5 BASIC16.87■□□□□ 0.29
CDX2Q99626 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC16.86■□□□□ 0.29
CDX2Q99626 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CDX2Q99626 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 PGP-201ENST00000333503 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC16.86■□□□□ 0.29
CDX2Q99626 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.86■□□□□ 0.29
CDX2Q99626 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 IGLJ3-201ENST00000390324 176 ntAPPRIS P1 BASIC16.86■□□□□ 0.29
CDX2Q99626 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CDX2Q99626 ZNF789-204ENST00000448667 1055 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 FHIT-208ENST00000492590 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC16.86■□□□□ 0.29
CDX2Q99626 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.86■□□□□ 0.29
CDX2Q99626 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.86■□□□□ 0.29
CDX2Q99626 AC061992.1-201ENST00000592569 777 ntTSL 3 BASIC16.86■□□□□ 0.29
CDX2Q99626 IFI27-206ENST00000612813 725 ntAPPRIS P2 TSL 3 BASIC16.86■□□□□ 0.29
CDX2Q99626 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CDX2Q99626 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC16.85■□□□□ 0.29
CDX2Q99626 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 ISY1-201ENST00000273541 1704 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 SGO1-201ENST00000263753 2338 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 ADAMTSL1-202ENST00000327883 1864 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 GUK1-206ENST00000366723 845 ntTSL 5 BASIC16.85■□□□□ 0.29
CDX2Q99626 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.85■□□□□ 0.29
CDX2Q99626 SMAGP-202ENST00000398453 1062 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 SMARCE1-204ENST00000400122 1263 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC16.85■□□□□ 0.29
CDX2Q99626 AC074338.1-201ENST00000416825 156 ntBASIC16.85■□□□□ 0.29
CDX2Q99626 AL445430.1-201ENST00000419796 699 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 RPL37A-203ENST00000427280 698 ntTSL 5 BASIC16.85■□□□□ 0.29
CDX2Q99626 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 RPL37A-206ENST00000456586 401 ntTSL 5 BASIC16.85■□□□□ 0.29
CDX2Q99626 RN7SL11P-201ENST00000471305 293 ntBASIC16.85■□□□□ 0.29
CDX2Q99626 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC16.85■□□□□ 0.29
CDX2Q99626 SMARCE1-213ENST00000578044 1184 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 MIF4GD-206ENST00000579119 856 ntTSL 3 BASIC16.85■□□□□ 0.29
CDX2Q99626 SMARCE1-216ENST00000580419 1228 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 AC011495.3-201ENST00000596472 427 ntTSL 2 BASIC16.85■□□□□ 0.29
CDX2Q99626 RPL37A-211ENST00000598925 775 ntTSL 5 BASIC16.85■□□□□ 0.29
CDX2Q99626 RN7SL736P-201ENST00000613111 269 ntBASIC16.85■□□□□ 0.29
CDX2Q99626 CASP16P-204ENST00000635032 809 ntBASIC16.85■□□□□ 0.29
CDX2Q99626 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 DIABLO-201ENST00000267169 1316 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 FXYD3-202ENST00000346446 1320 ntTSL 2 BASIC16.85■□□□□ 0.29
CDX2Q99626 FKBP10-201ENST00000321562 2662 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC16.85■□□□□ 0.29
CDX2Q99626 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 SMARCE1-205ENST00000431889 1569 ntTSL 2 BASIC16.85■□□□□ 0.29
CDX2Q99626 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC16.85■□□□□ 0.29
CDX2Q99626 PRSS36-202ENST00000418068 2446 ntTSL 2 BASIC16.85■□□□□ 0.29
CDX2Q99626 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC16.85■□□□□ 0.29
CDX2Q99626 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC16.84■□□□□ 0.29
CDX2Q99626 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 LCN9-201ENST00000277526 531 ntAPPRIS P2 TSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 IL27-201ENST00000356897 1044 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 MB-205ENST00000406324 582 ntAPPRIS P1 TSL 2 BASIC16.84■□□□□ 0.29
CDX2Q99626 ORMDL1-204ENST00000409519 1223 ntTSL 3 BASIC16.84■□□□□ 0.29
CDX2Q99626 LINC01840-201ENST00000421870 571 ntTSL 4 BASIC16.84■□□□□ 0.29
CDX2Q99626 NKAIN1P1-201ENST00000435754 582 ntBASIC16.84■□□□□ 0.29
CDX2Q99626 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC16.84■□□□□ 0.29
CDX2Q99626 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CDX2Q99626 AC105389.3-201ENST00000508038 907 ntTSL 5 BASIC16.84■□□□□ 0.29
CDX2Q99626 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.84■□□□□ 0.29
CDX2Q99626 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC16.84■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 51 ms