Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 TDRD7-201ENST00000355295 3834 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 MIR346-201ENST00000362234 95 ntBASIC17.06■□□□□ 0.32
PTPN9P43378 COA5-202ENST00000409997 557 ntTSL 4 BASIC17.06■□□□□ 0.32
PTPN9P43378 UPF3AP3-201ENST00000420996 769 ntBASIC17.06■□□□□ 0.32
PTPN9P43378 AC142381.1-201ENST00000426099 345 ntBASIC17.06■□□□□ 0.32
PTPN9P43378 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC17.06■□□□□ 0.32
PTPN9P43378 MEIS1-AS2-201ENST00000439433 690 ntTSL 2 BASIC17.06■□□□□ 0.32
PTPN9P43378 CEND1P1-201ENST00000451006 455 ntBASIC17.06■□□□□ 0.32
PTPN9P43378 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC17.06■□□□□ 0.32
PTPN9P43378 SEC24B-AS1-203ENST00000505895 800 ntTSL 4 BASIC17.06■□□□□ 0.32
PTPN9P43378 AC027117.2-201ENST00000522768 510 ntTSL 3 BASIC17.06■□□□□ 0.32
PTPN9P43378 KRT8P23-201ENST00000560090 1207 ntBASIC17.06■□□□□ 0.32
PTPN9P43378 Z97055.2-201ENST00000563715 859 ntTSL 3 BASIC17.06■□□□□ 0.32
PTPN9P43378 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC17.06■□□□□ 0.32
PTPN9P43378 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.06■□□□□ 0.32
PTPN9P43378 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC17.06■□□□□ 0.32
PTPN9P43378 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC17.06■□□□□ 0.32
PTPN9P43378 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PTPN9P43378 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.06■□□□□ 0.32
PTPN9P43378 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
PTPN9P43378 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC17.06■□□□□ 0.32
PTPN9P43378 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 TRPC1-201ENST00000273482 4324 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 HPS1-202ENST00000338546 1580 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 CCDC120-202ENST00000496529 2415 ntAPPRIS P3 TSL 2 BASIC17.06■□□□□ 0.32
PTPN9P43378 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
PTPN9P43378 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
PTPN9P43378 ISG20L2-202ENST00000368219 2310 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PTPN9P43378 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC17.05■□□□□ 0.32
PTPN9P43378 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC17.05■□□□□ 0.32
PTPN9P43378 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC17.05■□□□□ 0.32
PTPN9P43378 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 SGPP1-201ENST00000247225 3312 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 CDK19-202ENST00000368911 6246 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
PTPN9P43378 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 BLK-205ENST00000529894 2017 ntTSL 5 BASIC17.05■□□□□ 0.32
PTPN9P43378 NMRK2-201ENST00000168977 1126 ntAPPRIS P3 TSL 2 BASIC17.05■□□□□ 0.32
PTPN9P43378 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 MIR648-201ENST00000385046 94 ntBASIC17.05■□□□□ 0.32
PTPN9P43378 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC17.05■□□□□ 0.32
PTPN9P43378 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC17.05■□□□□ 0.32
PTPN9P43378 ZNF655-216ENST00000449244 544 ntTSL 4 BASIC17.05■□□□□ 0.32
PTPN9P43378 TIMM8BP1-201ENST00000452384 211 ntBASIC17.05■□□□□ 0.32
PTPN9P43378 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC17.05■□□□□ 0.32
PTPN9P43378 AC112482.1-201ENST00000492080 688 ntBASIC17.05■□□□□ 0.32
PTPN9P43378 AC098859.1-201ENST00000502915 1238 ntBASIC17.05■□□□□ 0.32
PTPN9P43378 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
PTPN9P43378 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 MIR3687-2-201ENST00000577708 61 ntBASIC17.05■□□□□ 0.32
PTPN9P43378 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC17.05■□□□□ 0.32
PTPN9P43378 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.05■□□□□ 0.32
PTPN9P43378 AC010327.4-202ENST00000591484 748 ntBASIC17.05■□□□□ 0.32
PTPN9P43378 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC17.05■□□□□ 0.32
PTPN9P43378 MIR3687-1-201ENST00000614492 61 ntBASIC17.05■□□□□ 0.32
PTPN9P43378 NMRK2-205ENST00000616156 1139 ntAPPRIS ALT2 TSL 5 BASIC17.05■□□□□ 0.32
PTPN9P43378 AC084121.4-201ENST00000641598 221 ntBASIC17.05■□□□□ 0.32
PTPN9P43378 AF228730.8-201ENST00000642140 221 ntBASIC17.05■□□□□ 0.32
PTPN9P43378 NTRK1-202ENST00000368196 2701 ntAPPRIS ALT2 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 DKC1-201ENST00000369550 2577 ntAPPRIS P3 TSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC17.05■□□□□ 0.32
PTPN9P43378 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
PTPN9P43378 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 IL11-201ENST00000264563 2281 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 GOLGA2P9-201ENST00000596977 1937 ntBASIC17.04■□□□□ 0.32
PTPN9P43378 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC17.04■□□□□ 0.32
PTPN9P43378 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.04■□□□□ 0.32
PTPN9P43378 AC018695.7-201ENST00000624587 2492 ntBASIC17.04■□□□□ 0.32
PTPN9P43378 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC17.04■□□□□ 0.32
PTPN9P43378 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN9P43378 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC17.04■□□□□ 0.32
PTPN9P43378 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC17.04■□□□□ 0.32
PTPN9P43378 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 HYPK-202ENST00000442995 1051 ntAPPRIS P2 TSL 1 (best) BASIC17.04■□□□□ 0.32
PTPN9P43378 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC17.04■□□□□ 0.32
PTPN9P43378 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC17.04■□□□□ 0.32
PTPN9P43378 AC245100.5-201ENST00000452108 331 ntBASIC17.04■□□□□ 0.32
PTPN9P43378 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC17.04■□□□□ 0.32
PTPN9P43378 CALM1-205ENST00000553542 877 ntTSL 5 BASIC17.04■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms