Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC19.38■□□□□ 0.69
HMGB1P09429 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC19.38■□□□□ 0.69
HMGB1P09429 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
HMGB1P09429 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 AL365330.1-201ENST00000607459 531 ntBASIC19.38■□□□□ 0.69
HMGB1P09429 AC091812.2-201ENST00000619081 385 ntBASIC19.38■□□□□ 0.69
HMGB1P09429 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC19.38■□□□□ 0.69
HMGB1P09429 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 GSR-201ENST00000221130 3119 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 AL139130.1-201ENST00000451362 5586 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 APBB1-202ENST00000311051 2619 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
HMGB1P09429 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC19.37■□□□□ 0.69
HMGB1P09429 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC19.37■□□□□ 0.69
HMGB1P09429 TMEM198B-203ENST00000482378 2230 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC19.37■□□□□ 0.69
HMGB1P09429 AC022188.1-201ENST00000620960 1664 ntBASIC19.37■□□□□ 0.69
HMGB1P09429 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC19.37■□□□□ 0.69
HMGB1P09429 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 CCDC28A-202ENST00000611852 1505 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 GLUD1-201ENST00000277865 3039 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 PCDHA1-203ENST00000504120 5263 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC19.37■□□□□ 0.69
HMGB1P09429 AC023274.1-201ENST00000418278 595 ntBASIC19.37■□□□□ 0.69
HMGB1P09429 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
HMGB1P09429 PGAM5P1-201ENST00000518923 814 ntBASIC19.37■□□□□ 0.69
HMGB1P09429 FAM86C2P-203ENST00000528684 1004 ntBASIC19.37■□□□□ 0.69
HMGB1P09429 AP000777.2-201ENST00000539897 501 ntTSL 4 BASIC19.37■□□□□ 0.69
HMGB1P09429 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.37■□□□□ 0.69
HMGB1P09429 FHL2-212ENST00000607522 759 ntTSL 2 BASIC19.37■□□□□ 0.69
HMGB1P09429 RRM2-202ENST00000360566 3673 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 OTUB1-202ENST00000422031 2297 ntAPPRIS ALT1 TSL 5 BASIC19.37■□□□□ 0.69
HMGB1P09429 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 NIPA2-201ENST00000337451 3233 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
HMGB1P09429 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC19.37■□□□□ 0.69
HMGB1P09429 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC19.37■□□□□ 0.69
HMGB1P09429 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 SOCS7-201ENST00000612932 7857 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
HMGB1P09429 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC19.37■□□□□ 0.69
HMGB1P09429 RASSF1-205ENST00000395126 1657 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
HMGB1P09429 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 FAM129B-201ENST00000373312 3957 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGB1P09429 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 ARHGEF25-202ENST00000333972 2246 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 GRB7-205ENST00000445327 2197 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGB1P09429 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 PMS2P7-201ENST00000506558 1336 ntBASIC19.36■□□□□ 0.69
HMGB1P09429 ITPRIPL1-205ENST00000536814 1947 ntAPPRIS P1 TSL 3 BASIC19.36■□□□□ 0.69
HMGB1P09429 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 FCN2-201ENST00000291744 1057 ntAPPRIS P2 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
HMGB1P09429 ATP5G3-202ENST00000392541 842 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 MIR940-201ENST00000401276 94 ntBASIC19.36■□□□□ 0.69
HMGB1P09429 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGB1P09429 AC004832.2-201ENST00000426397 482 ntBASIC19.36■□□□□ 0.69
HMGB1P09429 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC19.36■□□□□ 0.69
HMGB1P09429 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGB1P09429 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC19.36■□□□□ 0.69
HMGB1P09429 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC19.36■□□□□ 0.69
HMGB1P09429 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 ZCCHC3-201ENST00000500893 3354 ntAPPRIS P1 BASIC19.36■□□□□ 0.69
HMGB1P09429 AL138694.1-201ENST00000637731 1689 ntAPPRIS P1 TSL 5 BASIC19.36■□□□□ 0.69
HMGB1P09429 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC19.36■□□□□ 0.69
HMGB1P09429 AL603832.2-201ENST00000566195 2125 ntBASIC19.36■□□□□ 0.69
HMGB1P09429 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
HMGB1P09429 AL589702.1-201ENST00000641229 1509 ntBASIC19.35■□□□□ 0.69
HMGB1P09429 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGB1P09429 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC19.35■□□□□ 0.69
HMGB1P09429 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGB1P09429 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB1P09429 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGB1P09429 PUS1-208ENST00000542167 2151 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGB1P09429 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
HMGB1P09429 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC19.35■□□□□ 0.69
HMGB1P09429 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC19.35■□□□□ 0.69
HMGB1P09429 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC19.35■□□□□ 0.69
HMGB1P09429 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC19.35■□□□□ 0.69
HMGB1P09429 AC073389.1-201ENST00000595595 795 ntBASIC19.35■□□□□ 0.69
HMGB1P09429 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC19.35■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 44.9 ms