Protein–RNA interactions for Protein: Q9UPQ0

LIMCH1, LIM and calponin homology domains-containing protein 1, humanhuman

Predictions only

Length 1,083 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1Q9UPQ0 BACE1-211ENST00000528053 4083 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 KDM4B-211ENST00000611640 5703 ntTSL 5 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 CERS6-201ENST00000305747 7217 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
LIMCH1Q9UPQ0 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMCH1Q9UPQ0 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
LIMCH1Q9UPQ0 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.7
LIMCH1Q9UPQ0 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
LIMCH1Q9UPQ0 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC19.39■□□□□ 0.7
LIMCH1Q9UPQ0 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 AC009947.1-201ENST00000444350 727 ntBASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 SUMO2P17-202ENST00000508743 738 ntTSL 3 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 UNC93B6-202ENST00000528242 690 ntBASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 TCAP-202ENST00000578283 583 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 SCAF1-201ENST00000360565 4306 ntAPPRIS P2 TSL 2 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 FGF4-201ENST00000168712 3233 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 ERP29-203ENST00000546477 1698 ntTSL 3 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 VILL-207ENST00000465644 1857 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 AP005117.1-202ENST00000581724 1908 ntBASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.39■□□□□ 0.69
LIMCH1Q9UPQ0 GMIP-204ENST00000587238 2987 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 BMP4-201ENST00000245451 1917 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 RRM2B-201ENST00000251810 4931 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 BFSP2-201ENST00000302334 1558 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 GNRHR2-201ENST00000312753 1599 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 CSF3-203ENST00000394148 622 ntTSL 3 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 TM4SF19-204ENST00000454715 1061 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 RNA5SP419-201ENST00000515908 135 ntBASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 ZFP90-203ENST00000563169 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 METTL23-202ENST00000586200 465 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 ZNF561-AS1-204ENST00000587536 1799 ntTSL 2 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 METTL23-212ENST00000590964 1006 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 U82695.1-201ENST00000635752 1889 ntBASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC19.38■□□□□ 0.69
LIMCH1Q9UPQ0 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 AKR1B15-202ENST00000457545 1621 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 INHBB-201ENST00000295228 3204 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 MTCL1-205ENST00000517570 6009 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 MAST3-201ENST00000262811 5896 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 GTPBP8-208ENST00000619116 1378 ntTSL 5 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 SLC17A9-201ENST00000370349 2594 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 MRPL9-202ENST00000368830 1296 ntAPPRIS P3 TSL 1 (best) BASIC19.37■□□□□ 0.69
LIMCH1Q9UPQ0 DDT-204ENST00000404092 805 ntTSL 3 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms