Protein–RNA interactions for Protein: Q9UGP4

LIMD1, LIM domain-containing protein 1, humanhuman

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMD1Q9UGP4 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 KANSL2-212ENST00000550347 2714 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 PFN2-201ENST00000239940 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 EPM2A-201ENST00000367519 3465 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 DUS3L-201ENST00000309061 2113 ntAPPRIS P3 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LIMD1Q9UGP4 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 TMCO1-207ENST00000580248 1735 ntTSL 2 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 BTBD7P1-201ENST00000447253 1453 ntBASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 KDM6A-202ENST00000382899 5789 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 RAB8A-201ENST00000300935 2827 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 TBC1D2B-201ENST00000300584 6067 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 SPAG11A-201ENST00000326558 612 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 PPP1R27-201ENST00000330261 782 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 RBM3-202ENST00000376755 1130 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 FAM220BP-201ENST00000377689 816 ntBASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 FKBP11-203ENST00000453172 959 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 MIR4492-201ENST00000581627 80 ntBASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 TNFRSF13B-206ENST00000583789 859 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 AL133215.2-201ENST00000609242 977 ntBASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 MRFAP1-205ENST00000617365 2112 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 BANP-227ENST00000626016 2144 ntTSL 2 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 RHOF-201ENST00000267205 3009 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 GCFC2-202ENST00000409857 2516 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 AMMECR1-201ENST00000262844 5504 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 FAM135A-205ENST00000418814 6415 ntTSL 5 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 GABRB2-202ENST00000353437 1963 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 KLK6-202ENST00000376851 1708 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LIMD1Q9UGP4 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 SSB-202ENST00000409333 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 PRRT3-202ENST00000411976 1475 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 CNTNAP3-201ENST00000297668 5064 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 LCE3A-201ENST00000335674 270 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 BANF1P1-201ENST00000553684 263 ntBASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 WASH4P-201ENST00000564273 1246 ntBASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 AC106886.1-201ENST00000568660 600 ntBASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 ELOF1-206ENST00000590700 585 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 MALAT1-211ENST00000617791 394 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 MINK1-202ENST00000355280 4961 ntAPPRIS P4 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 SOCS2-AS1-202ENST00000500986 1655 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 AL021920.2-201ENST00000624828 1351 ntBASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 TADA1-201ENST00000367874 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 KRT8P49-201ENST00000604166 1432 ntBASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 RNF103-201ENST00000237455 3477 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LIMD1Q9UGP4 LMNA-208ENST00000448611 1943 ntTSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 PPARD-202ENST00000337400 2041 ntTSL 5 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 SPAG6-203ENST00000376624 2605 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 PSENEN-202ENST00000587708 1661 ntAPPRIS P1 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC17.11■□□□□ 0.33
LIMD1Q9UGP4 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.11■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 52.7 ms