Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 AL162727.3-201ENST00000635661 2787 ntBASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 STX3-203ENST00000529177 1571 ntTSL 2 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 PCDHGC3-205ENST00000617641 2346 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 PPA2-201ENST00000341695 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 TACC1-202ENST00000317827 7802 ntAPPRIS P3 TSL 1 (best) BASIC16.46■□□□□ 0.23
TM9SF3Q9HD45 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
TM9SF3Q9HD45 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
TM9SF3Q9HD45 POLR3E-203ENST00000418581 2529 ntTSL 2 BASIC16.46■□□□□ 0.22
TM9SF3Q9HD45 PACS2-205ENST00000547217 2809 ntTSL 5 BASIC16.46■□□□□ 0.22
TM9SF3Q9HD45 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
TM9SF3Q9HD45 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 ZBTB16-202ENST00000392996 2287 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 MYH14-203ENST00000425460 6811 ntAPPRIS P3 TSL 5 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 PP14571-201ENST00000404327 934 ntTSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 MRPS18AP1-201ENST00000414458 589 ntBASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 LINC01160-202ENST00000450155 894 ntTSL 3 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 AL627443.1-201ENST00000456477 1035 ntTSL 3 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 SECTM1-202ENST00000580437 1030 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 AC007967.4-201ENST00000614700 386 ntBASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 SPDYE12P-201ENST00000618416 771 ntBASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 AL590560.3-201ENST00000623350 461 ntBASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 DEF8-225ENST00000569453 1852 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 ELOVL7-205ENST00000508821 3994 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 TBC1D2-205ENST00000465784 3349 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 TRIM17-201ENST00000295033 1730 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 NQO2-201ENST00000338130 1515 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
TM9SF3Q9HD45 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 PCDHB19P-201ENST00000570871 2371 ntBASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 TRAF2-201ENST00000247668 2264 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 CNTNAP3-205ENST00000377659 2649 ntTSL 2 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 AZI2-205ENST00000420543 1366 ntTSL 3 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 JTB-201ENST00000271843 1287 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 CHIA-203ENST00000353665 1214 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 FAM159B-201ENST00000389074 847 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 CRB3P1-201ENST00000449338 276 ntBASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 CPLX2-206ENST00000512824 518 ntTSL 4 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 PUDP-206ENST00000540122 825 ntTSL 2 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 AC018653.3-201ENST00000544657 749 ntTSL 3 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 AC060834.1-201ENST00000443027 2032 ntBASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 MFGE8-201ENST00000268150 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 KRT86-201ENST00000293525 2091 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 C17orf113-201ENST00000587304 3746 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 ZNF414-202ENST00000393927 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 PPP1R3B-202ENST00000519699 2334 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
TM9SF3Q9HD45 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.43■□□□□ 0.22
TM9SF3Q9HD45 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TM9SF3Q9HD45 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
TM9SF3Q9HD45 CCNA1-203ENST00000625767 1699 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TM9SF3Q9HD45 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
TM9SF3Q9HD45 NCAPH2-205ENST00000420993 2037 ntAPPRIS P3 TSL 1 (best) BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms