Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 THEM4-201ENST00000368814 2377 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 AL080243.2-201ENST00000418783 582 ntBASIC15.97■□□□□ 0.15
LMX1AQ8TE12 AC099552.3-201ENST00000454149 367 ntTSL 3 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 CCDC74BP1-201ENST00000508880 1123 ntBASIC15.97■□□□□ 0.15
LMX1AQ8TE12 COQ6-210ENST00000554920 649 ntTSL 3 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 DBI-212ENST00000627305 620 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 FKBP4-208ENST00000630279 156 ntTSL 5 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 AC025048.6-201ENST00000634326 1161 ntBASIC15.97■□□□□ 0.15
LMX1AQ8TE12 AL358472.5-202ENST00000641448 1267 ntBASIC15.97■□□□□ 0.15
LMX1AQ8TE12 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 PTPRO-209ENST00000543886 2070 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 SLC43A1-201ENST00000278426 2598 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 AR-207ENST00000612010 3896 ntTSL 5 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 MED19-201ENST00000337672 1637 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 LRFN3-201ENST00000246529 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 GGT4P-201ENST00000623672 1708 ntBASIC15.97■□□□□ 0.15
LMX1AQ8TE12 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
LMX1AQ8TE12 GSKIP-205ENST00000555181 2218 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 AC006538.1-201ENST00000567905 1585 ntBASIC15.96■□□□□ 0.15
LMX1AQ8TE12 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 ZNF354C-201ENST00000315475 5411 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 ZNF394-201ENST00000337673 2179 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 C19orf54-203ENST00000470681 2521 ntTSL 2 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 ZSCAN2-203ENST00000334141 993 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 RN7SL618P-201ENST00000477850 296 ntBASIC15.96■□□□□ 0.15
LMX1AQ8TE12 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 SSH2-210ENST00000582084 560 ntTSL 3 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 SPDYE22P-201ENST00000582158 798 ntBASIC15.96■□□□□ 0.15
LMX1AQ8TE12 AC026979.3-201ENST00000607315 403 ntBASIC15.96■□□□□ 0.15
LMX1AQ8TE12 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.96■□□□□ 0.15
LMX1AQ8TE12 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 AMT-206ENST00000458307 1860 ntTSL 2 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 ATXN2-219ENST00000550104 4648 ntAPPRIS P3 TSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 LINC01979-201ENST00000576738 5271 ntTSL 1 (best) BASIC15.96■□□□□ 0.15
LMX1AQ8TE12 PHF12-201ENST00000268756 2957 ntTSL 1 (best) BASIC15.96■□□□□ 0.14
LMX1AQ8TE12 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 LTA-214ENST00000454783 1507 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 PML-206ENST00000395135 2199 ntAPPRIS ALT2 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 PKIG-202ENST00000372886 1180 ntAPPRIS P1 TSL 2 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 C2orf76-202ENST00000409466 1150 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 GAPDHP21-201ENST00000450301 1010 ntBASIC15.95■□□□□ 0.14
LMX1AQ8TE12 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 SPSB2-204ENST00000523102 1205 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 SPSB2-205ENST00000524270 1236 ntAPPRIS P1 TSL 1 (best) BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 AC135586.1-201ENST00000539323 574 ntBASIC15.95■□□□□ 0.14
LMX1AQ8TE12 CDK4-206ENST00000549606 558 ntTSL 2 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 AC040162.1-202ENST00000573493 573 ntAPPRIS P1 TSL 3 BASIC15.95■□□□□ 0.14
LMX1AQ8TE12 AC061975.2-201ENST00000581722 295 ntBASIC15.95■□□□□ 0.14
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms