Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 AC116003.1-201ENST00000578340 536 ntTSL 3 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 AL138828.2-201ENST00000615812 383 ntBASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 AL590560.3-201ENST00000623350 461 ntBASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 AL031731.1-201ENST00000642131 2094 ntBASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 CEP83-AS1-201ENST00000623122 2482 ntBASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 AP001094.4-201ENST00000579008 2176 ntBASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 GPAA1P2-202ENST00000606848 1787 ntBASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 ANKRD2-203ENST00000370655 1451 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
HDDC3Q8N4P3 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 DTX2-202ENST00000413936 2472 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 RHBDF1-201ENST00000262316 2992 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 PLCD3-212ENST00000619929 6107 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 MAP7-209ENST00000618822 4497 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 AC022144.1-201ENST00000602255 1580 ntBASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 ETV7-207ENST00000620358 1599 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 PCGF1-201ENST00000233630 1792 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 KAT7-213ENST00000510819 1769 ntTSL 2 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 RHBG-204ENST00000537040 1789 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 HIST1H4J-201ENST00000355057 373 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 HNRNPA3P1-201ENST00000401429 1139 ntBASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 HNRNPA3P5-201ENST00000455201 833 ntBASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 AL162231.3-201ENST00000556278 902 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 CHRNA5-203ENST00000559554 1051 ntTSL 3 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 GPER1-207ENST00000619052 571 ntTSL 2 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 SPDEF-201ENST00000374037 1895 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 AVPR1B-201ENST00000367126 2237 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 UCKL1-202ENST00000358711 1845 ntTSL 2 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 SPOP-201ENST00000347630 2965 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
HDDC3Q8N4P3 AC005915.1-201ENST00000624912 2018 ntBASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 FBXL22-202ENST00000534939 2443 ntAPPRIS ALT2 TSL 3 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 KDM5C-202ENST00000375379 5245 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 KLC1-202ENST00000334553 2524 ntTSL 5 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 TXNDC2-204ENST00000536353 1703 ntTSL 5 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 ZC3H12D-202ENST00000409948 753 ntTSL 3 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 Z98749.2-207ENST00000443658 679 ntTSL 2 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 AC093724.1-201ENST00000448659 1027 ntBASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 SLC25A30-AS1-201ENST00000506633 701 ntTSL 3 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 RN7SL828P-201ENST00000607615 303 ntBASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 PAX4-202ENST00000341640 2010 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 KMT5C-212ENST00000630497 2037 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 AC006538.1-201ENST00000567905 1585 ntBASIC16.46■□□□□ 0.23
HDDC3Q8N4P3 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms